Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   GFB63_RS06850 Genome accession   NZ_CP045596
Coordinates   1330561..1331520 (+) Length   319 a.a.
NCBI ID   WP_193838201.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain TK-P3A     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1325561..1336520
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GFB63_RS06840 (GFB63_07020) metG 1326086..1328089 (+) 2004 WP_111679289.1 methionine--tRNA ligase -
  GFB63_RS06845 (GFB63_07030) - 1328367..1329263 (-) 897 WP_193838200.1 LysR family transcriptional regulator -
  GFB63_RS06850 (GFB63_07040) coiA 1330561..1331520 (+) 960 WP_193838201.1 competence protein CoiA Machinery gene
  GFB63_RS06855 (GFB63_07045) pepF 1331531..1333336 (+) 1806 WP_084828540.1 oligoendopeptidase F Regulator
  GFB63_RS06860 (GFB63_07050) - 1333518..1334225 (+) 708 WP_024704213.1 O-methyltransferase -
  GFB63_RS06865 (GFB63_07055) - 1334287..1335429 (+) 1143 WP_024704214.1 peptidyl-prolyl cis-trans isomerase -

Sequence

Protein


Download         Length: 319 a.a.        Molecular weight: 38070.95 Da        Isoelectric Point: 9.1721

>NTDB_id=345248 GFB63_RS06850 WP_193838201.1 1330561..1331520(+) (coiA) [Streptococcus thermophilus strain TK-P3A]
MLIAKNQKGLLVSALENGLNREETYRCPGCQGIVLLRQGKVICPHFAHKSLQDCQFFSENESAQHLSLKATVYQSLDNHG
ERVCIEKVLPELGQIADLFVGDSLALEVQCSRLSQKRLRERTLAYHQIGYEVRWLLGQELWLGQRLTDIQRDFLYFTTKI
GFHLWELDWEREEIRLKYLIYEDIFGRVYYLTKTWSLIENLMTILRFPYQARKVETYQVTQRKKVSHVIQRELMGKNPRW
MRRQEEAYLKGMNLLSLSDQDFFPQVRFPESKHGFVQIRLSIDGFEKLFMQYYRKRDFSYKQTLCPPNFYAKIVDYRHN

Nucleotide


Download         Length: 960 bp        

>NTDB_id=345248 GFB63_RS06850 WP_193838201.1 1330561..1331520(+) (coiA) [Streptococcus thermophilus strain TK-P3A]
ATGTTAATCGCTAAAAATCAGAAAGGGCTCTTGGTTTCGGCTCTTGAAAATGGGTTGAATCGTGAGGAAACTTATAGGTG
CCCTGGCTGTCAAGGAATTGTATTGTTGAGACAGGGAAAGGTGATATGCCCGCATTTTGCCCATAAATCTTTGCAGGATT
GTCAGTTTTTCTCAGAAAATGAATCGGCCCAACATTTATCCCTAAAAGCCACTGTGTATCAATCCCTGGACAATCATGGT
GAAAGAGTTTGTATTGAAAAGGTTCTGCCTGAGTTAGGTCAGATTGCGGATTTATTCGTTGGAGATTCCTTAGCCTTGGA
AGTCCAGTGTTCTCGTTTATCACAGAAACGTTTAAGAGAGCGGACTTTAGCTTACCATCAAATAGGTTACGAGGTGCGAT
GGCTTTTGGGGCAAGAACTGTGGTTGGGACAGCGTTTAACAGATATACAGCGTGATTTTCTTTATTTTACAACTAAGATA
GGTTTCCACCTCTGGGAACTTGATTGGGAGAGGGAAGAGATTAGACTTAAGTATCTCATCTATGAGGATATTTTTGGGAG
AGTTTATTACTTAACTAAGACCTGGTCTTTAATAGAAAATCTCATGACCATATTACGTTTTCCTTATCAGGCCAGAAAGG
TGGAGACTTATCAAGTGACTCAGCGAAAGAAAGTCTCACATGTTATTCAACGGGAATTAATGGGGAAAAATCCAAGATGG
ATGAGAAGGCAGGAGGAGGCTTATCTTAAGGGGATGAATTTGTTAAGTTTGTCCGATCAGGATTTTTTTCCACAAGTGCG
GTTTCCTGAGTCTAAGCATGGATTTGTCCAAATTAGATTATCTATTGATGGTTTTGAAAAGCTTTTCATGCAGTATTATC
GAAAAAGGGATTTTTCTTACAAGCAAACCCTGTGCCCTCCCAACTTTTATGCTAAAATAGTAGATTATAGACACAATTAA

Domains

Predicted by InterProScan.

Competence protein CoiA-like family (CoiA_nuc)

(1-264)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus pneumoniae TIGR4

45.016

97.492

0.439
  coiA Streptococcus mitis NCTC 12261

45.016

97.492

0.439
  coiA Streptococcus pneumoniae Rx1

44.695

97.492

0.436
  coiA Streptococcus pneumoniae D39

44.695

97.492

0.436
  coiA Streptococcus pneumoniae R6

44.695

97.492

0.436

Multiple sequence alignment