Detailed information NTG0345245

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: EXN22_RS23430
• Genome accession: NZ_CP035952
• Coordinates: 5130604..5131473 (+)
• Length: 289 a.a.
• NCBI ID: WP_130266296.1
• Uniprot ID: -
• Organism: Pseudomonas tructae strain SNU WT1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5125604..5136473

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EXN22_RS23405 (EXN22_23405)	-	5125799..5126974 (+)	1176	WP_233281664.1	reverse transcriptase domain-containing protein	-
EXN22_RS23410 (EXN22_23410)	-	5127365..5128527 (+)	1163	WP_130266293.1	IS3 family transposase	-
EXN22_RS23420 (EXN22_23420)	-	5128764..5129174 (-)	411	WP_130266294.1	pilin	-
EXN22_RS23425 (EXN22_23425)	pilC	5129393..5130601 (+)	1209	WP_130266295.1	type II secretion system F family protein	Machinery gene
EXN22_RS23430 (EXN22_23430)	pilD	5130604..5131473 (+)	870	WP_130266296.1	A24 family peptidase	Machinery gene
EXN22_RS23435 (EXN22_23435)	coaE	5131473..5132096 (+)	624	WP_130266297.1	dephospho-CoA kinase	-
EXN22_RS23440 (EXN22_23440)	yacG	5132093..5132293 (+)	201	WP_130266298.1	DNA gyrase inhibitor YacG	-
EXN22_RS23445 (EXN22_23445)	-	5132298..5132987 (-)	690	WP_045200823.1	energy-coupling factor ABC transporter permease	-
EXN22_RS23450 (EXN22_23450)	-	5133033..5133494 (-)	462	WP_130266299.1	hypothetical protein	-
EXN22_RS23455 (EXN22_23455)	-	5133616..5134245 (+)	630	WP_130266300.1	DUF1780 domain-containing protein	-
EXN22_RS23460 (EXN22_23460)	-	5134414..5134587 (+)	174	WP_130266301.1	DUF3094 family protein	-
EXN22_RS23465 (EXN22_23465)	-	5134672..5135967 (+)	1296	WP_130266302.1	NAD(P)/FAD-dependent oxidoreductase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 31940.17 Da
• Isoelectric Point: 7.3878

>NTDB_id=345245 EXN22_RS23430 WP_130266296.1 5130604..5131473(+) (pilD) [Pseudomonas tructae strain SNU WT1]
MNLLNTLASQPLLYLSIALLLGLIVGSFLNVLVHRLPIMLERQWQAEAREVLALPEAAQAPRFDLFLPPSQCPHCAHRIR
PWENIPVVSYLALRGRCSDCQARISPRYPLVELACAALTLFVAWHLGFTASALALMVLSWGLLAMSMIDIEHHLLPDALV
LPLLWLGLIVNAFELFVPLEDALWGTVAGYLSLWSVFWVFKLITGKEGMGYGDFKLLALLGAWGGWQILPLTLLLSSLLG
AVIGLIMLRLQRKQASTPIPFGPYLAIAGWIALLWGGQITTSYLHFSGL

Nucleotide

• Length: 870 bp

>NTDB_id=345245 EXN22_RS23430 WP_130266296.1 5130604..5131473(+) (pilD) [Pseudomonas tructae strain SNU WT1]
ATGAACCTGTTGAACACCCTGGCCAGCCAGCCACTGCTGTACCTGAGCATCGCCCTGTTGCTCGGGCTGATCGTGGGCAG
TTTTCTCAATGTGCTGGTGCATCGCCTGCCGATCATGCTCGAACGCCAATGGCAGGCCGAAGCGCGTGAGGTGCTGGCGC
TGCCCGAGGCGGCGCAGGCGCCGCGCTTCGACCTGTTTTTGCCGCCCTCGCAATGCCCGCATTGCGCCCACCGCATCCGC
CCCTGGGAAAACATTCCGGTGGTGAGTTACCTGGCCTTGCGCGGGCGTTGCTCCGATTGCCAGGCGCGCATCAGCCCGCG
CTATCCGCTGGTGGAGCTGGCCTGCGCGGCGCTGACGCTGTTTGTCGCCTGGCATTTGGGCTTTACCGCCAGCGCCCTGG
CGCTGATGGTGCTGAGCTGGGGCCTGCTGGCCATGAGCATGATCGACATCGAACACCATCTGTTGCCCGATGCCCTGGTG
CTGCCGCTGTTGTGGCTGGGGCTGATCGTCAATGCCTTCGAGCTGTTCGTGCCGCTGGAAGACGCGCTGTGGGGTACGGT
GGCCGGTTACCTGAGCCTGTGGTCGGTGTTCTGGGTGTTCAAGCTGATCACCGGCAAGGAAGGCATGGGCTATGGCGATT
TCAAGTTGCTGGCGCTGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCTTGCTGCTGTCGTCGCTGCTGGGG
GCCGTGATTGGCCTGATTATGCTGCGCCTGCAGCGCAAGCAGGCCAGTACGCCGATCCCCTTCGGTCCTTATCTGGCCAT
CGCGGGCTGGATCGCGCTGCTCTGGGGTGGTCAAATAACCACTTCTTACCTGCATTTTTCTGGATTGTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (136-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-125)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	54.839	96.54	0.529
pilD	Vibrio campbellii strain DS40M4	49.474	98.616	0.488
pilD	Acinetobacter baumannii D1279779	50.365	94.81	0.478
pilD	Acinetobacter nosocomialis M2	49.635	94.81	0.471
pilD	Neisseria gonorrhoeae MS11	48.828	88.581	0.433