Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   CCANL266_RS00725 Genome accession   NZ_CP035946
Coordinates   156744..157511 (-) Length   255 a.a.
NCBI ID   WP_172229988.1    Uniprot ID   -
Organism   Campylobacter canadensis strain LMG 24001     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 151744..162511
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCANL266_RS00705 - 151914..152672 (-) 759 WP_172229979.1 tetratricopeptide repeat protein -
  CCANL266_RS00710 - 152744..153823 (+) 1080 WP_224316005.1 cytochrome-c peroxidase -
  CCANL266_RS00715 - 153838..155934 (-) 2097 WP_172229982.1 hypothetical protein -
  CCANL266_RS00720 ruvX 156376..156747 (-) 372 WP_172229985.1 Holliday junction resolvase RuvX -
  CCANL266_RS00725 dprA 156744..157511 (-) 768 WP_172229988.1 DNA-processing protein DprA Machinery gene
  CCANL266_RS00730 - 157498..158523 (-) 1026 WP_172229991.1 divergent polysaccharide deacetylase family protein -
  CCANL266_RS00735 ilvC 158523..159542 (-) 1020 WP_172229994.1 ketol-acid reductoisomerase -
  CCANL266_RS00740 - 159628..160446 (+) 819 WP_172229997.1 HDOD domain-containing protein -
  CCANL266_RS00745 - 160439..162334 (+) 1896 WP_172230000.1 ribonuclease R family protein -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 28611.07 Da        Isoelectric Point: 6.0447

>NTDB_id=345211 CCANL266_RS00725 WP_172229988.1 156744..157511(-) (dprA) [Campylobacter canadensis strain LMG 24001]
MIIDEFLKLEKAPKNINYKGNLELLKMPKISIVGSRKMSVYTKNCVLLLAKKLSNMGMCIVSGGAIGVDICAAQAAMPNT
IAIFANGLDRIYPKSNETTIKNIYEKALALSENENNHSPTKYDFLARNRLVVALSDILIIAQADYKSGSLNSAVWASKLN
KELFVLAQRVGESNGTNELIKNNKAKIIYDIDDFCEYIKDKYNLYFNEEKNQDELLEFCKNGANIDEVLNKFGDVLYDYE
LENKVVIDGVLVRSL

Nucleotide


Download         Length: 768 bp        

>NTDB_id=345211 CCANL266_RS00725 WP_172229988.1 156744..157511(-) (dprA) [Campylobacter canadensis strain LMG 24001]
ATGATTATAGATGAGTTTTTAAAGCTTGAAAAAGCACCTAAAAATATAAATTACAAAGGTAATTTAGAATTATTAAAAAT
GCCTAAAATAAGCATAGTTGGCTCAAGAAAAATGAGCGTTTATACTAAAAATTGTGTTTTGCTTTTAGCAAAAAAATTAA
GCAATATGGGAATGTGTATTGTAAGCGGCGGTGCTATTGGAGTTGATATTTGTGCTGCACAAGCTGCAATGCCTAATACC
ATTGCAATTTTTGCAAATGGACTTGATAGGATATATCCAAAATCCAATGAAACAACAATAAAAAATATTTACGAAAAGGC
ACTAGCTTTAAGCGAAAATGAAAATAATCATTCGCCTACAAAATACGATTTTTTAGCTAGAAATCGCTTAGTAGTAGCCT
TAAGTGATATTTTAATAATAGCTCAAGCTGATTATAAAAGCGGTTCTTTAAACAGTGCTGTTTGGGCTAGTAAATTAAAC
AAAGAACTTTTTGTTTTAGCACAAAGGGTTGGTGAAAGCAATGGCACAAACGAACTTATAAAAAACAATAAGGCAAAAAT
TATTTATGATATTGATGATTTTTGTGAATATATAAAGGATAAATATAATTTATATTTTAATGAAGAAAAAAATCAAGATG
AGCTTTTAGAATTTTGTAAAAATGGTGCTAATATTGATGAAGTATTAAACAAATTTGGTGATGTACTTTATGATTATGAG
CTTGAAAATAAAGTAGTAATTGATGGGGTTTTAGTAAGAAGTTTATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(8-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.812

100

0.58
  dprA Helicobacter pylori 26695

45.378

93.333

0.424

Multiple sequence alignment