Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GFB63_RS02865 Genome accession   NZ_CP045596
Coordinates   573244..573762 (-) Length   172 a.a.
NCBI ID   WP_179974001.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain TK-P3A     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 568244..578762
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GFB63_RS02845 (GFB63_02930) - 570154..571098 (+) 945 WP_014727694.1 magnesium transporter CorA family protein -
  GFB63_RS02850 (GFB63_02935) - 571168..571839 (+) 672 WP_011227551.1 DUF1129 domain-containing protein -
  GFB63_RS02855 (GFB63_02940) - 571956..572837 (+) 882 WP_100273138.1 DUF4300 family protein -
  GFB63_RS02860 (GFB63_02945) rpsR 572963..573202 (-) 240 WP_000068665.1 30S ribosomal protein S18 -
  GFB63_RS02865 (GFB63_02950) ssb 573244..573762 (-) 519 WP_179974001.1 single-stranded DNA-binding protein Machinery gene
  GFB63_RS02870 (GFB63_02955) rpsF 573774..574064 (-) 291 WP_179974002.1 30S ribosomal protein S6 -
  GFB63_RS02875 (GFB63_02960) - 574283..575236 (+) 954 WP_002951907.1 hypothetical protein -
  GFB63_RS02880 (GFB63_02965) mutY 576407..577558 (+) 1152 WP_100273139.1 A/G-specific adenine glycosylase -
  GFB63_RS02885 - 577857..578036 (+) 180 WP_193838372.1 hypothetical protein -
  GFB63_RS02890 (GFB63_02975) - 578309..578470 (-) 162 WP_014727699.1 hypothetical protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18738.45 Da        Isoelectric Point: 4.6190

>NTDB_id=345199 GFB63_RS02865 WP_179974001.1 573244..573762(-) (ssb) [Streptococcus thermophilus strain TK-P3A]
MINNVVLVGRMTRDAELRYTPSNVAVATFSLAVNRNFKGANGERETDFINCVIWRQQAENLANWAKKGALVGITGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRAAREGHSGGSYNVGGFDNSNSFGGGASTGDSFGESQPAQSTPNFGRDESPFGNS
NPMDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=345199 GFB63_RS02865 WP_179974001.1 573244..573762(-) (ssb) [Streptococcus thermophilus strain TK-P3A]
ATGATTAATAATGTCGTACTTGTTGGTCGCATGACCCGTGATGCGGAACTTCGTTACACACCAAGTAATGTTGCTGTTGC
AACATTCAGCCTTGCGGTTAATCGTAACTTTAAAGGTGCTAATGGTGAACGTGAAACTGACTTTATTAACTGTGTTATCT
GGCGCCAGCAGGCTGAAAATTTGGCTAACTGGGCTAAGAAAGGTGCATTGGTTGGAATTACAGGTCGTATTCAGACTCGT
AACTATGAAAATCAACAAGGTCAACGTGTTTACGTAACTGAAGTTGTCGCTGATAATTTCCAAATGTTGGAAAGCCGTGC
GGCACGTGAAGGTCATAGTGGTGGTTCATACAATGTTGGAGGATTTGATAACTCAAATTCATTCGGTGGTGGAGCTTCCA
CTGGTGATTCGTTTGGTGAATCACAACCTGCACAATCTACACCAAACTTCGGTCGTGATGAAAGTCCATTTGGTAATTCA
AATCCAATGGATATTTCAGATGACGATCTTCCATTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

58.621

100

0.593
  ssbA Bacillus subtilis subsp. subtilis str. 168

54.301

100

0.587
  ssb Glaesserella parasuis strain SC1401

32.984

100

0.366