Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   C9E88_RS14955 Genome accession   NZ_CP035934
Coordinates   3186123..3186467 (-) Length   114 a.a.
NCBI ID   WP_227865820.1    Uniprot ID   -
Organism   Acinetobacter cumulans strain WCHAc060092     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3181123..3191467
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C9E88_RS14935 (C9E88_005455) - 3181237..3181941 (-) 705 WP_106984290.1 FHA domain-containing protein -
  C9E88_RS14940 (C9E88_005450) gspD 3182042..3184294 (-) 2253 WP_106984289.1 type II secretion system secretin GspD -
  C9E88_RS14945 (C9E88_005445) - 3184334..3185194 (-) 861 WP_106984288.1 type II secretion system protein N -
  C9E88_RS14950 (C9E88_005440) gspN 3185194..3185937 (-) 744 WP_106984287.1 type II secretion system protein N -
  C9E88_RS14955 (C9E88_005435) hns 3186123..3186467 (-) 345 WP_227865820.1 H-NS histone family protein Regulator
  C9E88_RS14960 (C9E88_005430) - 3186583..3187011 (-) 429 WP_106984286.1 thioesterase family protein -
  C9E88_RS14965 (C9E88_005425) - 3187024..3188217 (-) 1194 WP_106984285.1 hypothetical protein -
  C9E88_RS14970 (C9E88_005420) - 3188224..3189057 (-) 834 WP_106984284.1 hypothetical protein -
  C9E88_RS14975 (C9E88_005415) - 3189054..3189833 (-) 780 WP_106984283.1 uroporphyrinogen-III synthase -
  C9E88_RS14980 (C9E88_005410) hemC 3189855..3190772 (-) 918 WP_106984282.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 114 a.a.        Molecular weight: 12940.86 Da        Isoelectric Point: 6.4356

>NTDB_id=345172 C9E88_RS14955 WP_227865820.1 3186123..3186467(-) (hns) [Acinetobacter cumulans strain WCHAc060092]
MKLGVNVMPDISNLSVEELKRLQVEAEALIASKKDQAVEDAYNQILEIAENVGLTIEQILEFGASKRKKTVRKSVEPRYR
SKANQEDTWTGRGKQPRWLVAELEKGAKLEDFII

Nucleotide


Download         Length: 345 bp        

>NTDB_id=345172 C9E88_RS14955 WP_227865820.1 3186123..3186467(-) (hns) [Acinetobacter cumulans strain WCHAc060092]
ATGAAACTCGGAGTTAATGTAATGCCAGACATCAGTAATTTATCTGTAGAAGAATTAAAACGACTACAGGTTGAAGCGGA
AGCTTTAATTGCCTCTAAAAAAGATCAAGCAGTTGAAGATGCCTATAATCAAATCCTAGAAATCGCAGAAAATGTAGGTT
TAACGATTGAACAAATTTTAGAATTTGGTGCAAGCAAACGTAAAAAAACTGTGCGTAAATCAGTAGAGCCACGTTACCGT
AGCAAAGCAAATCAAGAAGACACTTGGACAGGTCGTGGTAAACAACCTCGTTGGTTGGTTGCAGAACTTGAAAAAGGTGC
GAAGTTAGAAGATTTTATTATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(18-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

84.906

92.982

0.789

Multiple sequence alignment