Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   C9E88_RS02190 Genome accession   NZ_CP035934
Coordinates   475368..476015 (-) Length   215 a.a.
NCBI ID   WP_106984104.1    Uniprot ID   -
Organism   Acinetobacter cumulans strain WCHAc060092     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 470368..481015
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C9E88_RS02155 (C9E88_002115) mlaE 470641..471420 (+) 780 WP_106984011.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  C9E88_RS02160 (C9E88_002110) - 471420..472082 (+) 663 WP_106984012.1 outer membrane lipid asymmetry maintenance protein MlaD -
  C9E88_RS02165 (C9E88_002105) - 472102..472737 (+) 636 WP_106984013.1 ABC transporter substrate-binding protein -
  C9E88_RS02170 (C9E88_002100) - 472749..473036 (+) 288 WP_106984014.1 STAS domain-containing protein -
  C9E88_RS02175 (C9E88_002095) - 473171..474184 (-) 1014 WP_106984015.1 CorA family divalent cation transporter -
  C9E88_RS02180 (C9E88_002090) - 474339..474935 (+) 597 WP_106984016.1 TIGR00730 family Rossman fold protein -
  C9E88_RS02185 (C9E88_002085) - 474937..475332 (+) 396 WP_106984017.1 NUDIX domain-containing protein -
  C9E88_RS02190 (C9E88_002080) comF 475368..476015 (-) 648 WP_106984104.1 phosphoribosyltransferase family protein Machinery gene
  C9E88_RS02195 (C9E88_002075) recG 476008..478053 (-) 2046 WP_106984018.1 ATP-dependent DNA helicase RecG -
  C9E88_RS02200 (C9E88_002070) - 478104..478877 (+) 774 WP_106984019.1 NAD(P)H-binding protein -
  C9E88_RS02205 (C9E88_002065) - 479019..479750 (+) 732 WP_117007432.1 hypothetical protein -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 24944.92 Da        Isoelectric Point: 8.4104

>NTDB_id=345151 C9E88_RS02190 WP_106984104.1 475368..476015(-) (comF) [Acinetobacter cumulans strain WCHAc060092]
MYNPKSNSILQQLTGLFRSFQPCQLCHADTQHWHQVCEDCWKSLPWQRQTIQRQGLQIMTPCRYDYPLDRIIQQYKYQQQ
LQFQPLLSGLLCSLKLPKKVQAIVPMPISTERLEERGFNQSLLIAQDLAKHLDVPIWQPVTRLKQHAQKGLSRLERMSDI
QQQFQLTPQNAVRYRNVLIVDDVVTTGSSIQALHNCLIELGCQQVHVTCLAVAEI

Nucleotide


Download         Length: 648 bp        

>NTDB_id=345151 C9E88_RS02190 WP_106984104.1 475368..476015(-) (comF) [Acinetobacter cumulans strain WCHAc060092]
ATGTATAACCCTAAATCTAATTCCATACTCCAGCAATTGACAGGGCTGTTTCGAAGCTTCCAGCCCTGTCAACTTTGCCA
TGCAGATACCCAACATTGGCATCAGGTCTGTGAGGATTGTTGGAAATCTTTACCTTGGCAAAGGCAAACCATACAGCGCC
AAGGCCTACAAATCATGACACCATGTCGTTACGACTATCCACTCGATCGCATTATTCAACAGTATAAATATCAACAACAA
CTACAATTTCAACCACTCCTTTCAGGCTTACTCTGCTCGCTCAAACTACCCAAAAAAGTACAGGCGATTGTTCCTATGCC
CATATCAACGGAACGCCTAGAAGAACGTGGTTTTAATCAGTCCTTGCTGATTGCACAAGATCTGGCAAAACACTTGGATG
TACCCATTTGGCAACCTGTCACACGTTTAAAACAACACGCACAAAAAGGCTTAAGTCGTTTAGAACGTATGAGTGATATT
CAACAACAATTTCAATTAACGCCACAAAATGCAGTGCGTTATCGCAATGTTCTGATTGTCGATGATGTGGTCACTACGGG
CAGTTCTATTCAAGCTCTACATAATTGCCTAATCGAATTGGGGTGCCAGCAGGTACATGTCACCTGCTTAGCCGTTGCAG
AAATTTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(121-211)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

56.566

92.093

0.521
  comF Acinetobacter baumannii D1279779

56.566

92.093

0.521

Multiple sequence alignment