Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   Len3610_RS15665 Genome accession   NZ_CP035925
Coordinates   3194882..3195352 (-) Length   156 a.a.
NCBI ID   WP_176448777.1    Uniprot ID   -
Organism   Lentibacillus sp. CBA3610     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3189882..3200352
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Len3610_RS15635 (Len3610_15590) - 3190195..3191142 (-) 948 WP_176448771.1 YybS family protein -
  Len3610_RS15640 (Len3610_15595) - 3191408..3191905 (+) 498 WP_255259919.1 DUF1189 family protein -
  Len3610_RS15645 (Len3610_15600) modA 3191918..3192682 (+) 765 WP_176448773.1 molybdate ABC transporter substrate-binding protein -
  Len3610_RS15650 (Len3610_15605) modB 3192695..3193372 (+) 678 WP_176448774.1 molybdate ABC transporter permease subunit -
  Len3610_RS15655 (Len3610_15610) - 3193390..3194007 (+) 618 WP_176448775.1 ATP-binding cassette domain-containing protein -
  Len3610_RS15660 (Len3610_15615) rpsR 3194567..3194797 (-) 231 WP_176448776.1 30S ribosomal protein S18 -
  Len3610_RS15665 (Len3610_15620) ssbA 3194882..3195352 (-) 471 WP_176448777.1 single-stranded DNA-binding protein Machinery gene
  Len3610_RS15670 (Len3610_15625) rpsF 3195368..3195658 (-) 291 WP_176448778.1 30S ribosomal protein S6 -
  Len3610_RS15675 (Len3610_15630) ychF 3195828..3196928 (-) 1101 WP_176448779.1 redox-regulated ATPase YchF -
  Len3610_RS15680 (Len3610_15635) - 3197327..3197524 (-) 198 WP_176448780.1 DUF951 domain-containing protein -
  Len3610_RS15685 (Len3610_15640) - 3197539..3198441 (-) 903 WP_176448781.1 mechanosensitive ion channel family protein -
  Len3610_RS15690 (Len3610_15645) - 3198512..3199537 (-) 1026 WP_176448782.1 hypothetical protein -
  Len3610_RS15695 (Len3610_15650) yyaC 3199623..3200246 (+) 624 WP_176448783.1 spore protease YyaC -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17433.10 Da        Isoelectric Point: 4.7093

>NTDB_id=345061 Len3610_RS15665 WP_176448777.1 3194882..3195352(-) (ssbA) [Lentibacillus sp. CBA3610]
MLNRVVLVGRLTKDPDLRYTPNGVAVANFTIAVNRPFSNQQGNRDADFINCVVWRRAAENLATYMKKGSMIGVDGRLQSR
TFEGRDGNTVFVTEVVADSVQFLESKGASQNRDQQTSGFQSNQNQNQNQTNQNQSNENPFKDNGEPIDISDDDLPF

Nucleotide


Download         Length: 471 bp        

>NTDB_id=345061 Len3610_RS15665 WP_176448777.1 3194882..3195352(-) (ssbA) [Lentibacillus sp. CBA3610]
ATGTTAAATCGTGTCGTATTAGTTGGCAGATTAACGAAGGATCCTGATTTACGTTATACACCAAATGGCGTTGCTGTAGC
CAATTTCACAATTGCAGTCAATCGCCCTTTTTCCAATCAGCAGGGGAATCGGGATGCCGATTTCATTAATTGCGTCGTAT
GGCGCAGAGCTGCTGAAAACCTGGCAACCTACATGAAAAAAGGCAGCATGATTGGCGTGGACGGCCGTCTGCAATCACGC
ACATTTGAAGGGCGGGACGGAAATACCGTCTTTGTAACTGAAGTGGTAGCAGATAGTGTTCAGTTCCTGGAATCAAAGGG
AGCTTCACAAAACAGAGATCAGCAAACATCAGGATTCCAGTCAAACCAGAACCAAAATCAGAACCAGACAAATCAAAACC
AATCGAATGAAAATCCATTCAAAGATAATGGAGAACCAATTGATATATCAGACGATGATTTACCATTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.386

100

0.647
  ssb Latilactobacillus sakei subsp. sakei 23K

54.971

100

0.603
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.547

67.949

0.391

Multiple sequence alignment