Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   EWA64_RS10185 Genome accession   NZ_CP035921
Coordinates   2005923..2006555 (-) Length   210 a.a.
NCBI ID   WP_011079297.1    Uniprot ID   -
Organism   Vibrio cidicii strain 2423-01     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2000923..2011555
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EWA64_RS10165 - 2001072..2002283 (+) 1212 WP_061896023.1 aspartate aminotransferase family protein -
  EWA64_RS10170 astA 2002383..2003402 (+) 1020 WP_061896024.1 arginine N-succinyltransferase -
  EWA64_RS10175 astD 2003420..2004877 (+) 1458 WP_061896025.1 succinylglutamate-semialdehyde dehydrogenase -
  EWA64_RS10180 - 2005058..2005849 (+) 792 WP_061896026.1 DUF1338 domain-containing protein -
  EWA64_RS10185 crp 2005923..2006555 (-) 633 WP_011079297.1 cAMP-activated global transcriptional regulator CRP Regulator
  EWA64_RS10190 - 2006798..2007667 (-) 870 WP_061896027.1 phosphoribulokinase -
  EWA64_RS10195 - 2007798..2008010 (-) 213 WP_045569696.1 YheU family protein -
  EWA64_RS10200 - 2008054..2009031 (-) 978 WP_061896037.1 hydrolase -
  EWA64_RS10205 - 2009202..2009684 (-) 483 WP_061896028.1 TIGR02444 family protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23538.33 Da        Isoelectric Point: 7.8387

>NTDB_id=345004 EWA64_RS10185 WP_011079297.1 2005923..2006555(-) (crp) [Vibrio cidicii strain 2423-01]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSAQMASRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=345004 EWA64_RS10185 WP_011079297.1 2005923..2006555(-) (crp) [Vibrio cidicii strain 2423-01]
ATGGTTCTAGGTAAACCTCAAACCGACCCAACACTAGAGTGGTTTCTTTCACACTGTCATATTCATAAGTACCCTTCAAA
AAGCACGCTGATCCACGCGGGCGAAAAAGCAGAAACTTTGTACTACATCGTGAAAGGTTCTGTTGCCGTGCTTATCAAAG
ACGAAGAAGGTAAAGAAATGATTCTTTCTTACCTGAACCAAGGTGACTTTATCGGTGAGCTAGGCTTGTTTGAAGAAGGC
CAAGAGCGTACTGCTTGGGTTCGTGCAAAATCTCCTTGTGAAGTGGCTGAAATTTCATTCAAGAAATTCCGTCAGTTAAT
CCAAGTCAATCCAGACATTCTTATGCGCTTGTCGGCGCAGATGGCAAGTCGCCTACAAGTGACCAGCCAGAAAGTCGGAG
ACTTGGCGTTCTTGGACGTGACTGGCCGTATCGCTCAGACACTGCTGAACCTAGCAAAACAGCCTGATGCGATGACGCAC
CCAGATGGCATGCAGATCAAGATCACTCGTCAAGAGATTGGTCAGATTGTTGGTTGTTCACGTGAAACCGTTGGCCGCAT
TCTGAAAATGCTGGAAGAGCAGAACCTGATCTCTGCGCACGGCAAAACCATTGTTGTTTACGGGACTCGTTAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

98.095

100

0.981
  crp Haemophilus influenzae Rd KW20

75.49

97.143

0.733
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467

Multiple sequence alignment