Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   GEV42_RS03310 Genome accession   NZ_CP045552
Coordinates   700607..701251 (-) Length   214 a.a.
NCBI ID   WP_043153262.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain YT12746     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 695607..706251
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GEV42_RS03280 (GEV42_03365) - 696466..697095 (+) 630 WP_003113192.1 glycoside hydrolase family 19 protein -
  GEV42_RS03285 (GEV42_03370) - 697092..697454 (+) 363 WP_004355109.1 hypothetical protein -
  GEV42_RS03290 (GEV42_03375) - 697451..697708 (+) 258 WP_031800321.1 hypothetical protein -
  GEV42_RS03295 (GEV42_03380) - 698056..698661 (+) 606 WP_023085654.1 aminodeoxychorismate/anthranilate synthase component II -
  GEV42_RS03300 (GEV42_03385) trpD 698663..699712 (+) 1050 WP_173834365.1 anthranilate phosphoribosyltransferase -
  GEV42_RS03305 (GEV42_03390) trpC 699709..700545 (+) 837 WP_003142812.1 indole-3-glycerol phosphate synthase TrpC -
  GEV42_RS03310 (GEV42_03395) crp 700607..701251 (-) 645 WP_043153262.1 cAMP-activated global transcriptional regulator CRP Regulator
  GEV42_RS03315 (GEV42_03400) - 701523..701945 (+) 423 WP_003085219.1 OsmC family protein -
  GEV42_RS03320 (GEV42_03405) speD 702265..703059 (+) 795 WP_003085223.1 adenosylmethionine decarboxylase -
  GEV42_RS03325 (GEV42_03410) coq7 703114..703761 (-) 648 WP_003085224.1 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinone monooxygenase -
  GEV42_RS03330 (GEV42_03415) - 703861..704199 (-) 339 WP_003085225.1 histidine triad nucleotide-binding protein -
  GEV42_RS03335 (GEV42_03420) - 704278..705759 (+) 1482 WP_003117981.1 AAA family ATPase -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24239.04 Da        Isoelectric Point: 8.0525

>NTDB_id=344959 GEV42_RS03310 WP_043153262.1 700607..701251(-) (crp) [Pseudomonas aeruginosa strain YT12746]
MVAITHTPKLKHLDKLLAHCHRRRYTAKSTIIYAGDRCETLFFIIKGSVTILIEEDDGREMIIGYLNSGDFFGELGLFEK
EGSEQERSAWVRAKVECEVAEISYAKFRELSQQDSEILYTLGSQMADRLRKTTRKVGDLAFLDVTGRVARTLLDLCQQPD
AMTHPDGMQIKITRQEIGRIVGCSREMVGRVLKSLEEQGLVHVKGKTMVVFGTR

Nucleotide


Download         Length: 645 bp        

>NTDB_id=344959 GEV42_RS03310 WP_043153262.1 700607..701251(-) (crp) [Pseudomonas aeruginosa strain YT12746]
ATGGTAGCTATTACCCACACACCCAAACTCAAACACCTAGACAAGCTGCTCGCACACTGTCACCGCCGCCGCTACACCGC
AAAGAGCACCATCATCTATGCCGGCGATCGCTGCGAAACGCTGTTCTTCATCATCAAGGGTTCGGTCACCATCCTCATCG
AGGAGGACGACGGCCGCGAAATGATCATCGGCTACCTCAACAGCGGTGATTTCTTCGGCGAGCTGGGATTGTTCGAAAAG
GAAGGCAGCGAACAGGAACGCAGCGCCTGGGTTCGTGCCAAGGTGGAATGCGAAGTCGCCGAGATCAGCTATGCGAAGTT
CCGCGAACTGTCGCAGCAGGACTCGGAGATCCTCTACACCCTCGGCAGCCAGATGGCCGACCGCCTGCGCAAGACCACCC
GCAAGGTGGGCGACCTGGCCTTCCTCGACGTCACCGGACGCGTCGCCCGCACCTTGCTGGACCTGTGCCAGCAACCGGAC
GCCATGACCCACCCGGACGGCATGCAGATCAAGATCACCCGCCAGGAGATCGGCCGGATCGTCGGCTGCTCGCGGGAAAT
GGTCGGACGCGTGCTGAAGAGCCTGGAGGAGCAGGGCCTGGTGCATGTGAAAGGAAAGACCATGGTGGTCTTCGGCACCC
GCTGA

Domains

Predicted by InterProScan.

Crp-like helix-turn-helix domain (HTH_Crp_2)

(146-209)

Cyclic nucleotide-binding domain (cNMP_binding)

(22-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

66.832

94.393

0.631
  crp Haemophilus influenzae Rd KW20

59.901

94.393

0.565
  crp Acinetobacter baumannii D1279779

55.051

92.523

0.509