Detailed information    

insolico Bioinformatically predicted

Overview


Name   recG   Type   Machinery gene
Locus tag   GBR75_RS05905 Genome accession   NZ_CP045468
Coordinates   1219969..1222029 (+) Length   686 a.a.
NCBI ID   WP_001151491.1    Uniprot ID   -
Organism   Staphylococcus aureus strain SAW1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 1214969..1227029
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GBR75_RS05880 (GBR75_05995) rpe 1215439..1216083 (+) 645 WP_000164340.1 ribulose-phosphate 3-epimerase -
  GBR75_RS05885 (GBR75_06000) - 1216090..1216731 (+) 642 WP_000547905.1 thiamine diphosphokinase -
  GBR75_RS05890 (GBR75_06005) rpmB 1217113..1217301 (-) 189 WP_000517908.1 50S ribosomal protein L28 -
  GBR75_RS05895 (GBR75_06010) - 1217744..1218118 (+) 375 WP_000171418.1 Asp23/Gls24 family envelope stress response protein -
  GBR75_RS05900 (GBR75_06015) fakA 1218133..1219779 (+) 1647 WP_000623917.1 fatty acid kinase catalytic subunit FakA -
  GBR75_RS05905 (GBR75_06020) recG 1219969..1222029 (+) 2061 WP_001151491.1 ATP-dependent DNA helicase RecG Machinery gene
  GBR75_RS05910 (GBR75_06025) fapR 1222231..1222803 (+) 573 WP_001548538.1 transcription factor FapR -
  GBR75_RS05915 (GBR75_06030) plsX 1222808..1223794 (+) 987 WP_000239738.1 phosphate acyltransferase PlsX -
  GBR75_RS05920 (GBR75_06035) fabD 1223787..1224713 (+) 927 WP_160210512.1 ACP S-malonyltransferase -
  GBR75_RS05925 (GBR75_06040) fabG 1224706..1225440 (+) 735 WP_000167269.1 3-oxoacyl-[acyl-carrier-protein] reductase -
  GBR75_RS05930 (GBR75_06045) - 1225746..1225979 (+) 234 WP_000426914.1 acyl carrier protein -
  GBR75_RS05935 (GBR75_06050) rnc 1226095..1226826 (+) 732 WP_000043237.1 ribonuclease III -

Sequence


Protein


Download         Length: 686 a.a.        Molecular weight: 78289.78 Da        Isoelectric Point: 5.9590

>NTDB_id=344486 GBR75_RS05905 WP_001151491.1 1219969..1222029(+) (recG) [Staphylococcus aureus strain SAW1]
MAKVNLIESPYSLLQLKGIGPKKIEVLQQLNIHTVEDLVLYLPTRYEDNTVIDLNQAEDQSNVTIEGQVYTAPVVAFFGR
NKSKLTVHLMVNNIAVKCIFFNQPYLKKKIELNQTITVKGKWNRVKQEITGNRVFFNSQGTQNQENADVQLEPVYRIKEG
IKQKQIRDQIRQALNDVTIHEWLTDELREKYKLETLDFTLNTLHHPKSKEDLLRARRTYAFTELFLFELRMQWLNRLEKS
SDEAIEIDYDLDQVKSFIDCLPFELTEAQKSSVNEIFRDLKAPIRMHRLLQGDVGSGKTVVAAICMYALKTAGYQSALMV
PTEILAEQHAESLMALFGDSMNVALLTGSVKGKKRKILLEQLENGTIDCLIGTHALIQDDVIFHNVGLVITDEQHRFGVN
QRQLLREKGAMTNVLFMTATPIPRTLAISVFGEMDVSSIKQLPKGRKPIITTWAKHEQYDNVLMQMTSELKKGRQAYVIC
PLIESSEHLEDVQNVVALYESLQQYYGVSRVGLLHGKLSADEKDEVMQKFSNHEIDVLVSTTVVEVGVNVPNATFMMIYD
ADRFGLSTLHQLRGRVGRSDQQSYCVLIASPKTETGIERMTIMTQTTDGFELSERDLEMRGPGDFFGVKQSGLPDFLVAN
LVEDYRMLEVARDEAAELIQSGVFFENTYQHLRHFVEENLLHRSFD

Nucleotide


Download         Length: 2061 bp        

>NTDB_id=344486 GBR75_RS05905 WP_001151491.1 1219969..1222029(+) (recG) [Staphylococcus aureus strain SAW1]
TTGGCGAAAGTAAACTTAATAGAAAGTCCATATTCTCTTTTACAATTAAAAGGTATAGGTCCTAAGAAAATAGAAGTATT
GCAACAATTAAATATTCATACAGTGGAAGATCTTGTTCTTTATTTGCCAACCAGATATGAAGATAATACAGTGATTGATT
TGAATCAAGCAGAAGATCAATCTAACGTTACGATAGAAGGACAAGTATATACAGCTCCAGTAGTTGCATTTTTTGGAAGA
AATAAATCAAAATTAACTGTTCATTTAATGGTAAATAATATTGCTGTCAAATGTATTTTTTTCAACCAACCGTATTTAAA
AAAGAAAATCGAATTAAATCAAACTATAACTGTTAAAGGTAAGTGGAATAGGGTTAAACAGGAAATTACTGGTAATAGGG
TTTTCTTTAATTCACAAGGTACACAAAATCAAGAAAACGCAGATGTTCAATTAGAACCAGTCTATCGTATTAAGGAAGGT
ATTAAACAAAAGCAAATACGAGACCAAATTAGACAAGCATTAAATGATGTGACAATTCATGAATGGTTAACTGATGAACT
AAGAGAAAAATATAAATTAGAGACCTTGGACTTTACTTTGAACACGTTACATCATCCTAAAAGTAAAGAGGATTTATTAC
GTGCTCGTAGAACCTATGCATTTACTGAACTGTTTTTATTCGAATTACGTATGCAATGGCTAAATAGATTAGAAAAGTCA
TCTGACGAAGCAATTGAAATTGATTATGACTTAGACCAAGTTAAATCATTTATTGATTGTTTACCTTTTGAACTAACTGA
AGCACAGAAATCCAGTGTTAATGAAATTTTTAGAGATTTAAAAGCACCAATACGTATGCATCGATTACTTCAAGGTGATG
TAGGTTCAGGAAAAACAGTAGTTGCTGCAATTTGTATGTATGCGTTAAAAACGGCTGGTTATCAATCAGCATTGATGGTA
CCAACTGAAATTTTAGCAGAGCAACATGCTGAAAGTTTAATGGCTTTATTTGGAGATTCTATGAACGTTGCATTGTTAAC
TGGGTCAGTAAAAGGTAAGAAACGAAAAATACTTTTAGAACAACTTGAAAATGGTACGATTGATTGTTTAATTGGAACCC
ATGCATTGATTCAAGATGATGTAATTTTCCATAATGTTGGTTTAGTAATTACAGATGAACAACATCGATTTGGTGTGAAT
CAACGCCAGCTTTTAAGAGAAAAAGGTGCAATGACGAATGTGTTATTTATGACAGCAACCCCGATACCAAGAACACTAGC
AATATCAGTTTTTGGTGAGATGGATGTGTCTTCAATTAAACAATTACCAAAAGGTCGTAAACCTATCATTACTACTTGGG
CAAAGCACGAGCAATACGATAATGTTTTGATGCAAATGACCTCAGAGTTGAAAAAAGGTCGTCAAGCATATGTCATTTGC
CCGCTTATAGAAAGTTCTGAGCATCTCGAAGATGTTCAAAATGTTGTCGCATTGTACGAGTCTTTACAACAGTATTATGG
TGTTTCCCGTGTAGGGTTATTGCATGGTAAGTTGTCTGCCGATGAAAAAGATGAAGTCATGCAAAAGTTTAGCAATCATG
AGATAGATGTTTTAGTTTCTACTACTGTTGTTGAAGTAGGTGTTAATGTACCGAATGCAACTTTTATGATGATTTATGAT
GCGGATCGCTTTGGATTATCAACTTTACATCAGTTACGCGGACGTGTGGGTAGAAGTGACCAGCAAAGTTACTGTGTTTT
AATTGCCTCCCCTAAAACAGAAACAGGAATTGAAAGAATGACAATTATGACACAAACAACGGATGGATTTGAATTGAGTG
AACGAGACTTAGAAATGCGTGGCCCTGGCGATTTCTTTGGTGTTAAACAAAGTGGATTGCCAGATTTCTTAGTTGCCAAT
TTAGTTGAAGATTATCGTATGTTAGAAGTTGCTCGTGATGAAGCAGCTGAACTTATTCAATCTGGCGTATTCTTTGAAAA
TACGTATCAACATTTACGTCATTTTGTTGAAGAAAATTTATTACATCGTAGTTTTGACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Bacillus subtilis subsp. subtilis str. 168

53.073

97.23

0.516

  recG/mmsA Streptococcus pneumoniae R6

50.388

94.023

0.474

  recG/mmsA Streptococcus pneumoniae R36A

50.388

94.023

0.474

  recG Neisseria meningitidis strain C311

39.759

96.793

0.385


Multiple sequence alignment