Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   PARA_RS10155 Genome accession   NC_015964
Coordinates   2081427..2083508 (-) Length   693 a.a.
NCBI ID   WP_014065706.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae T3T1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2076427..2088508
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PARA_RS10150 (PARA_19970) murI 2080605..2081396 (-) 792 WP_014065705.1 glutamate racemase -
  PARA_RS10155 (PARA_19980) recG 2081427..2083508 (-) 2082 WP_014065706.1 ATP-dependent DNA helicase RecG Machinery gene
  PARA_RS10160 (PARA_19990) spoT 2083508..2085628 (-) 2121 WP_014065707.1 bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase -
  PARA_RS10165 (PARA_20000) rpoZ 2085704..2085970 (-) 267 WP_005698386.1 DNA-directed RNA polymerase subunit omega -
  PARA_RS10170 (PARA_20010) gmk 2086031..2086657 (-) 627 WP_041918290.1 guanylate kinase -

Sequence

Protein


Download         Length: 693 a.a.        Molecular weight: 77796.26 Da        Isoelectric Point: 7.9036

>NTDB_id=34416 PARA_RS10155 WP_014065706.1 2081427..2083508(-) (recG) [Haemophilus parainfluenzae T3T1]
MSTQLLDAVPLTTLSGVGAAISDKLSRLGIHNLQDLLFHLPIRYEDRTRITPIADLRPEQYATIEGVVQTCEVAFGRRPI
LTVSLSDGTSKIMLRFFNFNVGMKNSFQIGTRVKAFGEIKRGRFMAEIHHPEYQIIRDNAPLVLEETLTPIYSTTEGLKQ
NSLRKLTDQALALLDKIQLTEILPNEFNPHPFSLKDAIRFLHRPPPDISLDILEKGQHPAQQRLIFEELLAHNLAMQKVR
LGTQQFLALPLHYQTNLKQRFLASLPFQPTNAQNRVVADIEQDLAKDYPMMRLVQGDVGSGKTLVAALAALLAIDNGKQV
ALMAPTEILAEQHANNFRRWLEPFGIEVGWLAGKVKGKARQTELEKIKSGAVQMVVGTHALFQEEVEFADLALVIIDEQH
RFGVHQRLMLREKGEKAGFYPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTVVISEERRDEIVARVKNACI
NEKRQAYWVCTLIDESEVLEAQAAEAIWEDLTKALPMLKIGLVHGRMKPQEKQDIMAAFKSAELDLLVATTVIEVGVDVP
NASLMIIENAERLGLSQLHQLRGRVGRGSTASFCVLMYKPPLGKVSQKRLQVLRDSQDGFVISEKDLEIRGPGEVLGTKQ
TGIAEFKVANLMRDRKMIPTVQHYAKALIVKYPDVAESLIRRWLNNREIYSNA

Nucleotide


Download         Length: 2082 bp        

>NTDB_id=34416 PARA_RS10155 WP_014065706.1 2081427..2083508(-) (recG) [Haemophilus parainfluenzae T3T1]
ATGAGCACGCAACTTCTCGATGCTGTTCCTCTAACCACTTTATCTGGTGTAGGCGCGGCAATCTCCGATAAATTAAGCCG
TCTTGGAATTCATAATCTCCAAGACTTACTTTTTCATTTACCTATCCGTTATGAAGATCGCACGAGAATAACACCCATTG
CTGATCTTCGTCCTGAACAATATGCCACCATTGAAGGTGTTGTTCAAACCTGTGAAGTTGCCTTTGGGCGCCGTCCTATT
TTAACTGTAAGTCTCTCTGATGGAACAAGCAAAATTATGCTTCGTTTCTTCAATTTTAATGTAGGGATGAAAAATAGTTT
TCAGATTGGTACGCGCGTCAAAGCGTTTGGTGAAATTAAACGCGGGCGTTTTATGGCGGAAATTCATCATCCTGAGTATC
AAATTATACGGGATAATGCTCCATTGGTTTTAGAGGAAACGCTCACACCAATTTATTCCACAACAGAAGGTTTAAAACAA
AATTCATTACGTAAGCTAACCGATCAAGCATTGGCTTTACTCGATAAAATCCAATTAACGGAAATTTTACCTAATGAATT
TAATCCACATCCTTTTAGCCTAAAGGATGCTATTCGATTTTTGCATCGTCCACCGCCAGATATCTCATTAGATATTTTGG
AGAAAGGACAACATCCCGCACAGCAACGACTTATCTTTGAAGAGCTTCTTGCACATAATCTTGCGATGCAAAAAGTGCGG
TTGGGTACGCAGCAGTTTTTAGCGTTGCCATTGCATTATCAAACTAATTTGAAGCAACGTTTTCTTGCATCTTTGCCTTT
TCAACCAACCAATGCCCAAAATAGAGTGGTGGCCGATATTGAACAGGATTTAGCAAAAGATTATCCGATGATGCGACTTG
TTCAAGGGGATGTAGGCTCAGGGAAAACGTTAGTGGCAGCCTTAGCTGCCTTATTAGCGATTGATAATGGCAAACAAGTG
GCTTTAATGGCGCCAACAGAGATTTTAGCGGAACAGCATGCAAATAATTTCCGCCGTTGGTTAGAACCTTTTGGTATTGA
AGTAGGCTGGTTAGCGGGTAAGGTGAAAGGGAAAGCTCGCCAAACCGAATTGGAAAAGATTAAATCAGGTGCTGTGCAAA
TGGTGGTGGGTACACATGCTTTATTCCAAGAAGAAGTGGAATTTGCTGATTTAGCCTTGGTAATTATTGATGAACAGCAT
CGTTTTGGTGTGCATCAACGTCTAATGTTGCGAGAAAAAGGCGAAAAAGCAGGATTTTATCCACATCAACTGATTATGAC
AGCAACACCAATCCCGAGAACGTTAGCGATGACGGTTTATGCTGATCTTGATACGTCGATTATTGACGAATTGCCACCAG
GTCGAACGCCGATTACGACAGTGGTTATTTCTGAAGAGCGTCGAGATGAAATCGTTGCTCGAGTCAAGAATGCCTGTATT
AATGAAAAACGTCAGGCTTATTGGGTTTGTACTTTAATTGATGAGTCTGAAGTATTAGAAGCGCAAGCAGCCGAGGCCAT
TTGGGAAGATTTAACGAAAGCGTTGCCGATGCTTAAAATTGGTCTTGTACATGGGCGAATGAAACCGCAAGAAAAACAAG
ATATTATGGCTGCCTTTAAAAGTGCAGAACTCGATTTGCTTGTGGCCACAACCGTAATCGAAGTGGGCGTAGATGTGCCG
AATGCCAGTCTTATGATCATTGAAAATGCTGAGCGCTTAGGTTTATCACAACTCCATCAGTTACGTGGGCGAGTAGGACG
TGGCAGCACGGCTTCTTTTTGTGTCCTAATGTATAAACCGCCATTGGGTAAAGTGTCGCAAAAACGTTTACAGGTACTAC
GCGATAGCCAAGATGGCTTTGTGATTTCGGAAAAAGATTTAGAAATTCGCGGCCCGGGTGAGGTATTGGGCACTAAGCAG
ACAGGGATCGCCGAATTTAAGGTGGCGAATTTAATGCGCGATCGTAAAATGATTCCAACCGTTCAACATTATGCTAAAGC
ATTAATAGTGAAATACCCGGATGTGGCAGAAAGTTTAATCCGCCGTTGGCTAAATAATCGAGAAATTTATTCGAATGCCT
AA

Domains

Predicted by InterProScan.

RecG wedge domain (RecG_wedge)

(15-172)

Helicase conserved C-terminal domain (Helicase_C)

(481-588)

DEAD/DEAH box helicase (DEAD)

(292-405)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(617-676)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

49.185

97.403

0.479
  recG/mmsA Streptococcus pneumoniae R6

40.673

94.372

0.384
  recG/mmsA Streptococcus pneumoniae R36A

40.673

94.372

0.384
  recG Bacillus subtilis subsp. subtilis str. 168

39.227

97.114

0.381

Multiple sequence alignment