Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   EPB55_RS08195 Genome accession   NZ_CP035731
Coordinates   1620857..1621489 (+) Length   210 a.a.
NCBI ID   WP_011079297.1    Uniprot ID   -
Organism   Vibrio vulnificus strain 2142-77     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1615857..1626489
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EPB55_RS08175 - 1617746..1618225 (+) 480 WP_011079301.1 TIGR02444 family protein -
  EPB55_RS08180 - 1618371..1619348 (+) 978 WP_011079300.1 hydrolase -
  EPB55_RS08185 - 1619404..1619616 (+) 213 WP_011079299.1 YheU family protein -
  EPB55_RS08190 - 1619745..1620614 (+) 870 WP_011079298.1 phosphoribulokinase -
  EPB55_RS08195 crp 1620857..1621489 (+) 633 WP_011079297.1 cAMP-activated global transcriptional regulator CRP Regulator
  EPB55_RS08200 - 1621700..1622491 (-) 792 WP_103276890.1 DUF1338 domain-containing protein -
  EPB55_RS08205 astD 1622704..1624161 (-) 1458 WP_103276891.1 succinylglutamate-semialdehyde dehydrogenase -
  EPB55_RS08210 astA 1624179..1625198 (-) 1020 WP_013571001.1 arginine N-succinyltransferase -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23538.33 Da        Isoelectric Point: 7.8387

>NTDB_id=344119 EPB55_RS08195 WP_011079297.1 1620857..1621489(+) (crp) [Vibrio vulnificus strain 2142-77]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSAQMASRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=344119 EPB55_RS08195 WP_011079297.1 1620857..1621489(+) (crp) [Vibrio vulnificus strain 2142-77]
ATGGTTCTAGGTAAACCTCAAACCGATCCAACACTAGAGTGGTTTCTTTCACACTGTCATATTCATAAGTACCCATCAAA
AAGCACGCTCATTCATGCGGGCGAAAAAGCAGAAACGCTTTACTACATCGTAAAAGGTTCTGTTGCGGTACTGATTAAGG
ATGAAGAAGGTAAAGAAATGATCCTTTCTTACCTAAATCAAGGTGACTTTATTGGTGAACTAGGCCTGTTCGAAGAAGGT
CAAGAGCGTACCGCATGGGTTCGTGCAAAATCACCTTGTGAAGTCGCAGAAATCTCATTCAAGAAATTCCGTCAGCTCAT
TCAGGTCAACCCTGACATCCTGATGCGTCTATCTGCTCAGATGGCAAGCCGTCTGCAAGTGACCAGCCAAAAAGTGGGTG
ACTTAGCATTCCTAGACGTAACTGGTCGTATCGCCCAGACGCTATTGAATCTGGCTAAACAACCAGATGCGATGACGCAC
CCAGATGGCATGCAGATCAAGATCACTCGTCAAGAAATCGGTCAAATCGTTGGCTGTTCTCGTGAGACAGTAGGTCGTAT
CTTGAAGATGCTCGAAGAGCAGAACCTGATTTCTGCACACGGCAAGACTATCGTTGTTTACGGTACTCGTTAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

98.095

100

0.981
  crp Haemophilus influenzae Rd KW20

75.49

97.143

0.733
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467

Multiple sequence alignment