Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   EPB54_RS15880 Genome accession   NZ_CP035701
Coordinates   3155689..3156321 (+) Length   210 a.a.
NCBI ID   WP_005381432.1    Uniprot ID   U2ZZI4
Organism   Vibrio parahaemolyticus strain 2012AW-0154     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3150689..3161321
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EPB54_RS15855 - 3150709..3152628 (+) 1920 WP_021449774.1 ABC transporter ATP-binding protein -
  EPB54_RS15860 - 3152625..3153113 (+) 489 WP_031778323.1 TIGR02444 family protein -
  EPB54_RS15865 - 3153200..3154207 (+) 1008 WP_025534966.1 hydrolase -
  EPB54_RS15870 - 3154241..3154453 (+) 213 WP_005458136.1 YheU family protein -
  EPB54_RS15875 - 3154579..3155448 (+) 870 WP_005458134.1 phosphoribulokinase -
  EPB54_RS15880 crp 3155689..3156321 (+) 633 WP_005381432.1 cAMP-activated global transcriptional regulator CRP Regulator
  EPB54_RS15885 - 3156478..3157269 (-) 792 WP_029803209.1 DUF1338 domain-containing protein -
  EPB54_RS15890 astD 3157512..3158969 (-) 1458 WP_154119952.1 succinylglutamate-semialdehyde dehydrogenase -
  EPB54_RS15895 astA 3158998..3160017 (-) 1020 WP_005458129.1 arginine N-succinyltransferase -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23665.48 Da        Isoelectric Point: 7.8388

>NTDB_id=343976 EPB54_RS15880 WP_005381432.1 3155689..3156321(+) (crp) [Vibrio parahaemolyticus strain 2012AW-0154]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEED
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSAQMARRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=343976 EPB54_RS15880 WP_005381432.1 3155689..3156321(+) (crp) [Vibrio parahaemolyticus strain 2012AW-0154]
ATGGTTCTAGGTAAACCTCAAACCGACCCAACATTAGAGTGGTTTCTTTCACACTGTCATATTCATAAGTACCCATCAAA
GAGCACGCTAATTCACGCAGGTGAAAAAGCTGAAACGTTGTACTACATCGTTAAAGGCTCTGTTGCGGTTCTTATCAAGG
ACGAAGAAGGTAAGGAAATGATTCTTTCTTACCTAAACCAAGGTGACTTTATTGGTGAACTTGGTCTATTCGAAGAAGAC
CAAGAGCGTACAGCTTGGGTTCGCGCTAAATCTCCTTGTGAAGTTGCTGAAATTTCTTTCAAGAAGTTCCGTCAGCTTAT
CCAAGTAAACCCAGACATCCTAATGCGTCTTTCTGCGCAGATGGCTCGTCGTCTTCAAGTAACTAGCCAAAAAGTGGGTG
ACCTAGCGTTCCTAGACGTAACTGGTCGTATCGCTCAGACGCTTCTGAACCTTGCTAAACAACCAGATGCGATGACTCAC
CCAGACGGCATGCAAATCAAGATCACTCGTCAAGAAATCGGTCAAATCGTTGGCTGTTCTCGTGAGACAGTAGGTCGTAT
CTTGAAGATGCTAGAAGAGCAGAACCTAATCTCTGCGCACGGTAAAACTATCGTTGTTTACGGTACTCGTTAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB U2ZZI4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

98.095

100

0.981
  crp Haemophilus influenzae Rd KW20

75.49

97.143

0.733
  crp Acinetobacter baumannii D1279779

47.826

98.571

0.471

Multiple sequence alignment