Detailed information NTG0343961

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: EPB54_RS14250
• Genome accession: NZ_CP035701
• Coordinates: 2842264..2843133 (+)
• Length: 289 a.a.
• NCBI ID: WP_031778454.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain 2012AW-0154
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2837264..2848133

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EPB54_RS14230	nadC	2837662..2838549 (+)	888	WP_015297249.1	carboxylating nicotinate-nucleotide diphosphorylase	-
EPB54_RS14235	pilA	2838814..2839263 (+)	450	WP_031778455.1	pilin	Machinery gene
EPB54_RS14240	pilB	2839267..2840952 (+)	1686	WP_062905453.1	type IV-A pilus assembly ATPase PilB	Machinery gene
EPB54_RS14245	pilC	2840976..2842199 (+)	1224	WP_005479682.1	type II secretion system F family protein	Machinery gene
EPB54_RS14250	pilD	2842264..2843133 (+)	870	WP_031778454.1	A24 family peptidase	Machinery gene
EPB54_RS14255	coaE	2843134..2843748 (+)	615	WP_031778453.1	dephospho-CoA kinase	-
EPB54_RS14260	zapD	2843776..2844516 (+)	741	WP_062905553.1	cell division protein ZapD	-
EPB54_RS14265	yacG	2844585..2844779 (+)	195	WP_005462546.1	DNA gyrase inhibitor YacG	-
EPB54_RS14270	rplS	2845160..2845513 (-)	354	WP_005462554.1	50S ribosomal protein L19	-
EPB54_RS14275	trmD	2845555..2846298 (-)	744	WP_024699424.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
EPB54_RS14280	rimM	2846326..2846874 (-)	549	WP_005462552.1	ribosome maturation factor RimM	-
EPB54_RS14285	rpsP	2846903..2847151 (-)	249	WP_005379962.1	30S ribosomal protein S16	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32433.54 Da
• Isoelectric Point: 7.1971

>NTDB_id=343961 EPB54_RS14250 WP_031778454.1 2842264..2843133(+) (pilD) [Vibrio parahaemolyticus strain 2012AW-0154]
MEVFQYYPWLFVVFASIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIKPPQELLTLSVPRSSCQNCATPIRIR
DNIPVISWLLLKGKCHHCHTAISPRYPLIELLTAACAGFVAYHFGFSYFTVALIFFTFVLIAATFIDLDTMLLPDQLTLP
LTWAGIALALTEISPVSLQDAVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGV
IFGLVQLRLQKQGIERAFPFGPYLAIAGWISLIWGDQILSWYFTSILGV

Nucleotide

• Length: 870 bp

>NTDB_id=343961 EPB54_RS14250 WP_031778454.1 2842264..2843133(+) (pilD) [Vibrio parahaemolyticus strain 2012AW-0154]
ATGGAAGTGTTCCAGTACTACCCTTGGCTATTCGTGGTGTTTGCCAGTATCTTCGGTTTAATTGTGGGTAGTTTTCTTAA
TGTAGTCATTTATCGGCTACCTAAAATCATGGAATTAGAATGGCGCCGTGAATGCGCCGAATCATTCCCTGAATATAAGA
TTAAGCCACCTCAAGAACTTTTGACATTAAGCGTGCCTCGCTCTTCGTGCCAAAACTGCGCGACGCCAATTCGTATTCGA
GACAATATTCCTGTAATCAGCTGGCTATTGTTAAAAGGAAAATGCCATCATTGTCATACCGCAATTAGTCCTCGCTATCC
GCTGATAGAATTACTCACTGCTGCGTGCGCTGGTTTTGTGGCTTATCATTTCGGCTTTAGCTACTTTACGGTTGCGTTAA
TCTTTTTCACATTTGTCTTAATAGCCGCGACTTTTATCGATCTCGATACTATGCTGCTACCGGACCAATTAACATTACCA
TTAACTTGGGCTGGCATTGCGTTAGCATTAACAGAAATAAGCCCTGTTAGTCTACAAGACGCCGTAATTGGTGCGATTGC
CGGTTATTTGTGTCTTTGGTCAGTATATTGGGGTTTCAAACTGCTTACTGGTAAAGAAGGCATGGGTTACGGTGATTTTA
AATTGCTGGCTGCCCTTGGCGCTTGGCTAGGATGGCAATCATTACCAATGATCATCCTACTTTCTTCCGTCGTCGGTGTG
ATATTCGGGCTAGTCCAGTTACGACTACAAAAACAAGGTATAGAGAGAGCTTTCCCTTTCGGCCCATATTTAGCGATTGC
AGGATGGATAAGCTTAATCTGGGGCGATCAAATTCTAAGTTGGTACTTCACGTCAATTTTAGGGGTGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	88.927	100	0.889
pilD	Vibrio cholerae strain A1552	73.611	99.654	0.734
pilD	Acinetobacter baumannii D1279779	52.239	92.734	0.484
pilD	Acinetobacter nosocomialis M2	51.866	92.734	0.481
pilD	Neisseria gonorrhoeae MS11	47.464	95.502	0.453