Detailed information NTG0343949

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: GC226_RS18135
• Genome accession: NZ_CP045209
• Coordinates: 3728910..3729902 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081519.1
• Uniprot ID: -
• Organism: Escherichia coli strain 4
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3723910..3734902

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GC226_RS18110 (GC226_18210)	ygbN	3724565..3725929 (+)	1365	WP_000104439.1	GntP family transporter	-
GC226_RS18115 (GC226_18215)	-	3725968..3726204 (-)	237	WP_000562984.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
GC226_RS18120 (GC226_18220)	-	3726215..3727642 (-)	1428	WP_000863223.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
GC226_RS18125 (GC226_18225)	-	3727642..3728235 (-)	594	WP_000767707.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
GC226_RS18130 (GC226_18230)	-	3728382..3728789 (+)	408	WP_001208070.1	MarR family winged helix-turn-helix transcriptional regulator	-
GC226_RS18135 (GC226_18235)	rpoS	3728910..3729902 (-)	993	WP_000081519.1	RNA polymerase sigma factor RpoS	Regulator
GC226_RS18140 (GC226_18240)	nlpD	3729965..3731059 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
GC226_RS18145 (GC226_18245)	pcm	3731244..3731870 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
GC226_RS18150 (GC226_18250)	surE	3731864..3732625 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
GC226_RS18155 (GC226_18255)	truD	3732606..3733655 (-)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
GC226_RS18160 (GC226_18260)	ispF	3733652..3734131 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
GC226_RS18165 (GC226_18265)	ispD	3734131..3734841 (-)	711	WP_000246136.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 38004.90 Da
• Isoelectric Point: 4.5597

>NTDB_id=343949 GC226_RS18135 WP_000081519.1 3728910..3729902(-) (rpoS) [Escherichia coli strain 4]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLMVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=343949 GC226_RS18135 WP_000081519.1 3728910..3729902(-) (rpoS) [Escherichia coli strain 4]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGATGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	72.755	97.879	0.712