Detailed information NTG0343935

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: EPB57_RS20855
• Genome accession: NZ_CP035700
• Coordinates: 2654154..2655023 (-)
• Length: 289 a.a.
• NCBI ID: WP_154205048.1
• Uniprot ID: -
• Organism: Vibrio alginolyticus strain 2013V-1302
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2649154..2660023

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EPB57_RS20820	rpsP	2649753..2650001 (+)	249	WP_005379962.1	30S ribosomal protein S16	-
EPB57_RS20825	rimM	2650031..2650579 (+)	549	WP_154205047.1	ribosome maturation factor RimM	-
EPB57_RS20830	trmD	2650607..2651368 (+)	762	WP_005385420.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
EPB57_RS20835	rplS	2651410..2651763 (+)	354	WP_005379971.1	50S ribosomal protein L19	-
EPB57_RS20840	yacG	2652418..2652612 (-)	195	WP_017635922.1	DNA gyrase inhibitor YacG	-
EPB57_RS20845	zapD	2652771..2653511 (-)	741	WP_005373086.1	cell division protein ZapD	-
EPB57_RS20850	coaE	2653539..2654153 (-)	615	WP_137282357.1	dephospho-CoA kinase	-
EPB57_RS20855	pilD	2654154..2655023 (-)	870	WP_154205048.1	A24 family peptidase	Machinery gene
EPB57_RS20860	pilC	2655088..2656311 (-)	1224	WP_154205049.1	type II secretion system F family protein	Machinery gene
EPB57_RS20865	pilB	2656335..2658020 (-)	1686	WP_154205050.1	type IV-A pilus assembly ATPase PilB	Machinery gene
EPB57_RS20870	-	2658032..2658490 (-)	459	WP_154205051.1	pilin	-
EPB57_RS20875	nadC	2658746..2659633 (-)	888	WP_047102656.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32562.82 Da
• Isoelectric Point: 7.8460

>NTDB_id=343935 EPB57_RS20855 WP_154205048.1 2654154..2655023(-) (pilD) [Vibrio alginolyticus strain 2013V-1302]
MEVFQYYPWLFVVFATIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIKPPKEVLTLSVPRSSCQKCATPIRIR
DNIPVISWLLLKGKCHNCQATISARYPLIELLTAFCSGFIAYYFGFSYFTVALLFFTFILIAATFIDLDTMLLPDQLTLP
LTWAGIALALVEISPVTLQDSVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGI
VFGIIQLRLQKQGIEKAFPFGPYLAIAGWISLIWGDQILNWYFTSVLGV

Nucleotide

• Length: 870 bp

>NTDB_id=343935 EPB57_RS20855 WP_154205048.1 2654154..2655023(-) (pilD) [Vibrio alginolyticus strain 2013V-1302]
ATGGAAGTATTCCAGTACTACCCTTGGCTATTCGTTGTGTTTGCCACCATCTTCGGTCTGATCGTGGGTAGCTTCCTCAA
TGTGGTTATTTATCGACTACCTAAAATCATGGAACTAGAATGGCGACGCGAATGTGCCGAGTCATTTCCTGAATACAAAA
TAAAACCTCCTAAAGAAGTGCTGACCTTGAGCGTCCCACGCTCCTCCTGCCAGAAATGCGCAACACCGATACGTATTCGC
GACAACATTCCTGTGATTAGCTGGCTGCTTTTAAAAGGCAAATGTCACAACTGTCAGGCAACCATTAGTGCACGCTATCC
ACTGATTGAACTGCTCACCGCGTTCTGTTCAGGCTTTATAGCTTATTACTTTGGTTTTAGTTACTTTACCGTTGCCCTAC
TCTTTTTTACTTTTATCTTAATCGCCGCAACATTTATCGATCTCGATACTATGTTGTTACCTGACCAATTAACATTACCA
TTAACTTGGGCTGGCATTGCCTTAGCATTAGTCGAAATAAGTCCTGTTACTCTACAAGATTCTGTCATTGGTGCTATTGC
TGGTTACCTATGTCTCTGGTCCGTTTACTGGGGCTTTAAGTTACTTACTGGTAAAGAAGGAATGGGGTATGGTGATTTTA
AACTACTAGCGGCACTAGGAGCTTGGCTAGGTTGGCAGTCACTGCCGATGATCATTCTACTTTCTTCTGTGGTTGGCATC
GTATTTGGCATCATTCAACTACGCTTGCAAAAGCAGGGAATTGAAAAAGCTTTCCCTTTCGGTCCTTACTTAGCAATTGC
TGGTTGGATAAGCTTAATTTGGGGCGACCAGATTTTAAACTGGTACTTTACTTCAGTTCTAGGAGTGTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (135-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	91.003	100	0.91
pilD	Vibrio cholerae strain A1552	73.264	99.654	0.73
pilD	Acinetobacter baumannii D1279779	52.222	93.426	0.488
pilD	Acinetobacter nosocomialis M2	51.852	93.426	0.484
pilD	Neisseria gonorrhoeae MS11	47.653	95.848	0.457