Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   ET948_RS08705 Genome accession   NZ_CP035697
Coordinates   1855679..1857043 (+) Length   454 a.a.
NCBI ID   WP_154115895.1    Uniprot ID   -
Organism   Vibrio cincinnatiensis strain 2409-02     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1850679..1862043
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ET948_RS08690 cas6f 1850930..1851568 (+) 639 WP_154115433.1 type I-F CRISPR-associated endoribonuclease Cas6/Csy4 -
  ET948_RS08700 uvrB 1853317..1855347 (+) 2031 WP_154115434.1 excinuclease ABC subunit UvrB -
  ET948_RS08705 luxO 1855679..1857043 (+) 1365 WP_154115895.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  ET948_RS08710 luxU 1857050..1857388 (+) 339 WP_154115435.1 quorum-sensing phosphorelay protein LuxU -
  ET948_RS08715 - 1857381..1858271 (-) 891 WP_078924971.1 YvcK family protein -
  ET948_RS08720 moaA 1858575..1859564 (+) 990 WP_195707268.1 GTP 3',8-cyclase MoaA -
  ET948_RS08725 moaB 1859617..1860129 (+) 513 WP_078924970.1 molybdenum cofactor biosynthesis protein B -
  ET948_RS08730 moaC 1860141..1860620 (+) 480 WP_154115437.1 cyclic pyranopterin monophosphate synthase MoaC -
  ET948_RS08735 moaD 1860617..1860862 (+) 246 WP_078924968.1 molybdopterin synthase sulfur carrier subunit -
  ET948_RS08740 moaE 1860868..1861317 (+) 450 WP_078924967.1 molybdopterin synthase catalytic subunit MoaE -
  ET948_RS08745 - 1861471..1861887 (+) 417 WP_078924966.1 CBS domain-containing protein -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 50602.88 Da        Isoelectric Point: 6.2949

>NTDB_id=343880 ET948_RS08705 WP_154115895.1 1855679..1857043(+) (luxO) [Vibrio cincinnatiensis strain 2409-02]
MVEDTASVAALYRSYLTPLEIDITIVGTGRAAIESLNRRKPDLILLDLRLPDMTGMDVLHAVKERSADVPIIFMTAHGSI
DTAVEAMRYGAQDFLIKPCEADRLRVTVNNAIRKASKLKNNPSHSTNSNYQGFIGSSQTMQAVYRTIDSAASSKASIFIT
GESGTGKEVCAEAIHAASKRGEKPFIAINCAAIPKDLIESELFGHVKGAFTGAAVDRQGAAELADGGTLFLDELCEMDLD
LQTKLLRFIQTGTFQKVGSSKMHSVDVRFVCATNRDPWKEVQAGRFREDLYYRLYVIPLHLPPLRERGEDVIEIAYSLLG
HMSKEEGKEFVRLSPEVIERFKHYEWPGNVRQLQNVLRNVVVLNHGQEITLPMLPPPLNLPRIQERSVAPQPVDTGLSVH
DIFPLWMTEKQAIEKAIEACDGNIPRAASYLDVSPSTIYRKLQAWNEKEQEKEQ

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=343880 ET948_RS08705 WP_154115895.1 1855679..1857043(+) (luxO) [Vibrio cincinnatiensis strain 2409-02]
ATGGTGGAGGATACCGCTTCGGTTGCGGCGTTGTATCGTTCTTATCTCACTCCATTAGAGATTGATATTACCATTGTTGG
AACAGGACGCGCTGCGATTGAAAGCCTTAATCGACGAAAACCCGACTTAATCTTATTGGATTTACGTCTGCCAGATATGA
CGGGTATGGATGTCTTGCATGCGGTTAAAGAACGTTCAGCGGACGTTCCTATCATTTTTATGACGGCTCACGGTTCTATT
GATACCGCCGTCGAAGCCATGCGGTATGGTGCACAGGATTTTTTAATTAAACCTTGTGAAGCGGATCGTCTGCGAGTTAC
CGTGAATAATGCGATACGCAAAGCCTCCAAATTAAAAAATAACCCCAGTCATTCAACCAATTCTAACTATCAAGGCTTTA
TTGGTAGTAGTCAGACGATGCAAGCGGTTTATCGAACGATTGATTCTGCTGCCAGCAGTAAAGCGAGCATATTTATTACA
GGGGAAAGTGGCACAGGAAAAGAAGTATGTGCAGAAGCCATTCATGCGGCCAGTAAACGAGGTGAGAAACCTTTTATTGC
GATCAACTGCGCGGCGATTCCCAAAGATTTGATTGAAAGTGAATTGTTCGGTCATGTGAAAGGAGCCTTTACAGGCGCGG
CCGTGGATAGACAAGGGGCTGCTGAGCTAGCCGATGGGGGGACTCTGTTTTTAGATGAATTGTGCGAAATGGATTTGGAT
TTACAAACCAAATTGTTGCGCTTTATTCAAACCGGCACCTTTCAAAAAGTGGGTTCATCAAAAATGCACAGTGTGGATGT
TCGCTTTGTCTGTGCGACTAACCGCGACCCATGGAAAGAAGTACAAGCAGGGCGGTTTCGTGAAGATTTGTACTACCGGT
TGTATGTGATTCCTCTCCATTTACCGCCATTAAGAGAGCGGGGAGAAGATGTGATTGAAATTGCTTACTCGCTGCTGGGA
CATATGTCTAAAGAAGAAGGAAAAGAATTTGTTCGTCTTTCGCCAGAAGTGATAGAGCGTTTTAAACATTATGAGTGGCC
GGGAAATGTGCGCCAATTGCAGAATGTGTTACGCAATGTGGTGGTGCTTAATCATGGGCAGGAGATTACTTTACCTATGC
TGCCGCCGCCTTTAAATTTACCTCGAATTCAAGAGCGTTCGGTTGCTCCTCAGCCAGTGGATACTGGGCTTTCTGTGCAT
GACATCTTTCCGTTATGGATGACAGAAAAGCAGGCCATAGAAAAAGCCATCGAAGCGTGTGATGGCAACATCCCACGAGC
AGCCAGCTATTTAGACGTTAGCCCTTCAACCATCTATCGCAAGTTACAAGCATGGAATGAGAAAGAACAAGAGAAGGAGC
AATGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(134-299)

Response regulator receiver domain (Response_reg)

(2-108)

Bacterial regulatory protein, Fis family (HTH_8)

(405-445)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

87.444

98.238

0.859
  pilR Pseudomonas aeruginosa PAK

38.876

98.018

0.381
  pilR Acinetobacter baumannii strain A118

35.608

100

0.368

Multiple sequence alignment