Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   ET948_RS05570 Genome accession   NZ_CP035697
Coordinates   1200823..1201455 (-) Length   210 a.a.
NCBI ID   WP_004394497.1    Uniprot ID   A0A7X4XR47
Organism   Vibrio cincinnatiensis strain 2409-02     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1195823..1206455
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ET948_RS05550 - 1196119..1197330 (+) 1212 WP_154115198.1 aspartate aminotransferase family protein -
  ET948_RS05555 astA 1197425..1198444 (+) 1020 WP_154115199.1 arginine N-succinyltransferase -
  ET948_RS05560 astD 1198462..1199925 (+) 1464 WP_154115200.1 succinylglutamate-semialdehyde dehydrogenase -
  ET948_RS05565 - 1199962..1200756 (+) 795 WP_154115201.1 DUF1338 domain-containing protein -
  ET948_RS05570 crp 1200823..1201455 (-) 633 WP_004394497.1 cAMP-activated global transcriptional regulator CRP Regulator
  ET948_RS05575 - 1201695..1202564 (-) 870 WP_078926704.1 phosphoribulokinase -
  ET948_RS05580 - 1202669..1202878 (-) 210 WP_078926703.1 YheU family protein -
  ET948_RS05585 - 1202974..1203948 (-) 975 WP_154115202.1 hydrolase -
  ET948_RS05590 - 1204030..1204509 (-) 480 WP_154115203.1 TIGR02444 family protein -
  ET948_RS05595 - 1204506..1206428 (-) 1923 WP_154115204.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23651.45 Da        Isoelectric Point: 7.8388

>NTDB_id=343875 ET948_RS05570 WP_004394497.1 1200823..1201455(-) (crp) [Vibrio cincinnatiensis strain 2409-02]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEED
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSGQMARRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=343875 ET948_RS05570 WP_004394497.1 1200823..1201455(-) (crp) [Vibrio cincinnatiensis strain 2409-02]
ATGGTTCTAGGTAAACCTCAAACCGATCCAACACTAGAGTGGTTTCTTTCACATTGTCATATTCATAAGTACCCTTCAAA
AAGCACGCTGATTCATGCGGGCGAGAAGGCTGAAACCTTGTACTACATTGTCAAAGGTTCTGTGGCTGTACTGATCAAAG
ATGAAGAAGGTAAAGAGATGATTCTTTCTTACCTTAACCAAGGAGACTTCATCGGCGAACTGGGCTTGTTTGAAGAAGAT
CAAGAGCGCACCGCTTGGGTTCGAGCGAAATCGCCTTGTGAAGTGGCGGAGATCTCATTTAAAAAATTCCGTCAACTTAT
TCAAGTTAACCCAGATATTCTCATGCGTTTGTCTGGCCAAATGGCCCGTCGTTTGCAAGTAACCAGCCAAAAAGTGGGAG
ACCTTGCTTTCCTAGACGTAACCGGCCGTATTGCACAAACGCTTCTCAACTTAGCAAAACAACCTGATGCAATGACTCAT
CCCGATGGGATGCAAATCAAAATCACTCGTCAGGAAATTGGTCAGATCGTGGGTTGTTCACGTGAAACCGTAGGCCGTAT
TTTGAAGATGCTTGAAGAGCAGAACTTGATTTCCGCACACGGTAAAACGATTGTGGTTTACGGCACTCGTTAA

Domains

Predicted by InterproScan.

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7X4XR47

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

98.571

100

0.986
  crp Haemophilus influenzae Rd KW20

75

97.143

0.729
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467

Multiple sequence alignment