Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicR   Type   Regulator
Locus tag   SDEG_RS02920 Genome accession   NC_012891
Coordinates   560183..560890 (+) Length   235 a.a.
NCBI ID   WP_003055001.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. equisimilis GGS_124     
Function   repress comCDE expression; repress comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 555183..565890
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SDEG_RS02895 (SDEG_0584) - 555897..557321 (+) 1425 WP_012766692.1 glycoside hydrolase family 1 protein -
  SDEG_RS02900 (SDEG_0585) - 557420..558235 (-) 816 WP_041788871.1 TIGR03943 family putative permease subunit -
  SDEG_RS02905 (SDEG_0586) - 558235..559137 (-) 903 WP_012766694.1 permease -
  SDEG_RS11160 (SDEG_0587) - 559284..559439 (-) 156 WP_012766695.1 SPJ_0845 family protein -
  SDEG_RS02915 (SDEG_0588) - 559614..560096 (+) 483 WP_003055012.1 cupin domain-containing protein -
  SDEG_RS02920 (SDEG_0589) vicR 560183..560890 (+) 708 WP_003055001.1 response regulator transcription factor Regulator
  SDEG_RS02925 (SDEG_0590) - 560891..562219 (+) 1329 WP_012766697.1 two-component system histidine kinase PnpS -
  SDEG_RS02930 (SDEG_0591) - 562386..563261 (+) 876 WP_003055008.1 substrate-binding domain-containing protein -
  SDEG_RS02935 (SDEG_0592) pstC 563379..564242 (+) 864 WP_012766699.1 phosphate ABC transporter permease subunit PstC -
  SDEG_RS02940 (SDEG_0593) pstA 564235..565050 (+) 816 WP_003060853.1 phosphate ABC transporter permease PstA -
  SDEG_RS02945 (SDEG_0594) pstB 565052..565804 (+) 753 WP_003061255.1 phosphate ABC transporter ATP-binding protein PstB -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 27491.70 Da        Isoelectric Point: 5.4461

>NTDB_id=34384 SDEG_RS02920 WP_003055001.1 560183..560890(+) (vicR) [Streptococcus dysgalactiae subsp. equisimilis GGS_124]
MTKQILLVDDEEHILRLLDYHLGKEGFSTQLVTDGRKALTLAETEPFDFILLDIMLPQLDGIEVCKRLRAKGIKTPIMMV
SAKSDEFDKVLALELGADDYLTKPFSPRELLARVKAILRRTSKEQQEDDTDDFRDDYRVFGALTVYPDRHEVYKADHLLS
LTPKEFELLLYLMKHPNMTLTRERLLERIWGYDFGQETRLVDVHIGKLRDKIEDNPKDPQFIQTIRGYGYKFKEL

Nucleotide


Download         Length: 708 bp        

>NTDB_id=34384 SDEG_RS02920 WP_003055001.1 560183..560890(+) (vicR) [Streptococcus dysgalactiae subsp. equisimilis GGS_124]
ATGACAAAACAAATCTTATTAGTGGATGATGAAGAACACATTTTGAGGCTACTGGATTATCATCTCGGTAAAGAAGGGTT
TTCCACACAATTGGTAACAGATGGCCGAAAAGCATTGACATTGGCAGAAACAGAGCCTTTTGACTTTATCCTACTGGATA
TTATGTTGCCTCAGTTAGACGGCATAGAAGTGTGTAAGCGACTGAGAGCTAAAGGAATAAAAACTCCGATTATGATGGTT
TCTGCTAAAAGTGATGAATTTGATAAGGTTTTGGCCTTGGAATTAGGAGCTGATGACTACCTGACTAAGCCTTTTAGCCC
TAGAGAATTGCTGGCGCGTGTCAAGGCTATTTTACGTCGAACCAGTAAAGAGCAGCAAGAAGATGACACAGATGATTTCA
GGGATGATTATCGGGTATTTGGGGCCCTGACCGTCTATCCAGACCGGCATGAGGTTTATAAGGCAGATCATTTATTGAGC
CTTACCCCAAAGGAATTTGAACTCTTGCTCTATCTTATGAAACATCCCAACATGACATTAACTAGGGAACGTTTACTTGA
ACGGATTTGGGGATATGATTTTGGACAAGAAACCCGTTTAGTGGATGTTCATATTGGCAAATTGAGAGATAAGATAGAGG
ATAATCCTAAAGACCCTCAATTTATTCAAACGATTAGAGGCTATGGGTATAAGTTTAAGGAGTTATAG

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(159-232)

Response regulator receiver domain (Response_reg)

(5-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicR Streptococcus mutans UA159

49.145

99.574

0.489
  micA Streptococcus pneumoniae Cp1015

47.619

98.298

0.468
  covR Lactococcus lactis subsp. lactis strain DGCC12653

41.772

100

0.421
  covR Streptococcus salivarius strain HSISS4

40.506

100

0.409

Multiple sequence alignment