Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   SDEG_RS02840 Genome accession   NC_012891
Coordinates   540136..540945 (+) Length   269 a.a.
NCBI ID   WP_003059746.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. equisimilis GGS_124     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 535136..545945
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SDEG_RS02815 (SDEG_0566) - 535510..536211 (-) 702 WP_012766679.1 amino acid ABC transporter permease -
  SDEG_RS02820 (SDEG_0567) - 536225..537025 (-) 801 WP_003057243.1 transporter substrate-binding domain-containing protein -
  SDEG_RS02825 (SDEG_0568) - 537025..537819 (-) 795 WP_041788867.1 amino acid ABC transporter ATP-binding protein -
  SDEG_RS02830 (SDEG_0569) vicR 538077..538787 (+) 711 WP_012766682.1 response regulator YycF Regulator
  SDEG_RS02835 (SDEG_0570) vicK 538780..540132 (+) 1353 WP_012766683.1 cell wall metabolism sensor histidine kinase VicK Regulator
  SDEG_RS02840 (SDEG_0571) vicX 540136..540945 (+) 810 WP_003059746.1 MBL fold metallo-hydrolase Regulator
  SDEG_RS02845 (SDEG_0572) rnc 541703..542395 (+) 693 WP_003057240.1 ribonuclease III -
  SDEG_RS02850 (SDEG_0573) smc 542396..545941 (+) 3546 WP_012766684.1 chromosome segregation protein SMC -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 30157.38 Da        Isoelectric Point: 6.0739

>NTDB_id=34383 SDEG_RS02840 WP_003059746.1 540136..540945(+) (vicX) [Streptococcus dysgalactiae subsp. equisimilis GGS_124]
MIESGFKYSILASGSTGNCFYLETPKKRLLIDAGLTGKKITSLLAEIDRKPEDLDAILITHEHSDHIKGVGVMARKYHLD
VYANEKTWQLMDERNMLGKLDASQKHIFQRDKMLTFGDVDIESFGVSHDAVDPQFYRIMKDNKSFVMLTDTGYVSDRMTG
IIENADGYLIESNHDIEILRSGSYPWSLKQRILSDMGHLSNEDGAGAMIRSLGHKTKKIYLGHLSKENNIKELAHMTMVN
QLAMADLAVGTDFTVHDTSPDTACPLTDI

Nucleotide


Download         Length: 810 bp        

>NTDB_id=34383 SDEG_RS02840 WP_003059746.1 540136..540945(+) (vicX) [Streptococcus dysgalactiae subsp. equisimilis GGS_124]
ATGATTGAAAGTGGTTTTAAATACAGTATTTTAGCATCCGGATCCACAGGCAATTGTTTTTATTTAGAAACACCTAAAAA
GCGATTATTAATTGACGCGGGGTTGACTGGTAAGAAAATCACCAGTCTCCTTGCTGAAATTGACCGCAAGCCTGAAGATT
TAGATGCTATTTTGATTACACATGAACATTCAGATCATATCAAAGGAGTGGGAGTGATGGCTCGCAAGTACCATTTGGAT
GTTTATGCCAACGAAAAAACATGGCAGTTGATGGATGAGCGTAATATGCTCGGAAAGCTTGATGCCTCCCAAAAACATAT
TTTCCAAAGAGATAAGATGTTGACCTTTGGAGATGTTGACATTGAAAGTTTTGGCGTTAGTCACGATGCGGTTGATCCTC
AGTTTTACCGCATTATGAAGGACAACAAATCGTTTGTGATGCTGACTGATACAGGTTATGTCAGTGACCGAATGACAGGT
ATTATTGAAAATGCAGATGGCTACTTGATTGAGTCCAATCATGACATTGAAATTTTACGGTCGGGTTCTTACCCTTGGAG
TTTAAAACAACGCATTTTGTCAGACATGGGCCATTTGTCAAATGAAGATGGCGCTGGAGCTATGATTAGAAGTTTAGGGC
ATAAGACCAAAAAAATCTATTTGGGCCATTTGAGTAAAGAAAATAACATCAAAGAGTTGGCTCACATGACCATGGTGAAC
CAATTAGCCATGGCAGATTTAGCGGTAGGTACAGACTTTACTGTTCATGACACTTCCCCAGACACAGCTTGTCCCTTGAC
GGATATTTAA

Domains

Predicted by InterproScan.

Beta-lactamase superfamily domain (Lactamase_B_2)

(28-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

76.58

100

0.766

Multiple sequence alignment