Detailed information
Bioinformatically predicted
Overview
| Name | comB | Type | Machinery gene |
| Locus tag | PARA_RS04060 | Genome accession | NC_015964 |
| Coordinates | 796392..796904 (+) | Length | 170 a.a. |
| NCBI ID | WP_014064654.1 | Uniprot ID | - |
| Organism | Haemophilus parainfluenzae T3T1 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 791392..801904
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PARA_RS04040 (PARA_08020) | psiE | 791478..791894 (+) | 417 | WP_014064650.1 | phosphate-starvation-inducible protein PsiE | - |
| PARA_RS04045 (PARA_08030) | - | 791930..792775 (-) | 846 | WP_014064651.1 | 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ | - |
| PARA_RS10515 | - | 792839..793531 (-) | 693 | Protein_798 | penicillin-binding protein 1A | - |
| PARA_RS04050 (PARA_08040) | - | 793607..795457 (-) | 1851 | Protein_799 | penicillin-binding protein 1A | - |
| PARA_RS04055 (PARA_08050) | comA | 795557..796399 (+) | 843 | WP_014064653.1 | hypothetical protein | Machinery gene |
| PARA_RS04060 (PARA_08060) | comB | 796392..796904 (+) | 513 | WP_014064654.1 | hypothetical protein | Machinery gene |
| PARA_RS04065 (PARA_08070) | comC | 796901..797443 (+) | 543 | WP_014064655.1 | hypothetical protein | Machinery gene |
| PARA_RS04070 (PARA_08080) | - | 797443..797826 (+) | 384 | WP_014064656.1 | pilus assembly protein PilP | - |
| PARA_RS04075 (PARA_08090) | comE | 797828..799210 (+) | 1383 | WP_014064657.1 | type IV pilus secretin PilQ | Machinery gene |
| PARA_RS04080 (PARA_08100) | - | 799230..799919 (+) | 690 | WP_014064658.1 | ComF family protein | - |
| PARA_RS04085 (PARA_08110) | nfuA | 800033..800617 (+) | 585 | WP_014064659.1 | Fe-S biogenesis protein NfuA | - |
Sequence
Protein
Download Length: 170 a.a. Molecular weight: 20206.23 Da Isoelectric Point: 6.4916
>NTDB_id=34383 PARA_RS04060 WP_014064654.1 796392..796904(+) (comB) [Haemophilus parainfluenzae T3T1]
MFSLNLLPWRLEQHQKAFRRFMWQGFIWLACSVLIVIGLNQLNEQQGQALSQTKEKLTQITHQVHQKRIQVQQLQSSLKE
MNELTEMGTEYVYRLLNLLSELPLKQGELDEFTLNAKQIVLSGMTESQQEFEEIHQFLKRHFTEVNLTKFQPVQQQLFFQ
FDIHLSESVQ
MFSLNLLPWRLEQHQKAFRRFMWQGFIWLACSVLIVIGLNQLNEQQGQALSQTKEKLTQITHQVHQKRIQVQQLQSSLKE
MNELTEMGTEYVYRLLNLLSELPLKQGELDEFTLNAKQIVLSGMTESQQEFEEIHQFLKRHFTEVNLTKFQPVQQQLFFQ
FDIHLSESVQ
Nucleotide
Download Length: 513 bp
>NTDB_id=34383 PARA_RS04060 WP_014064654.1 796392..796904(+) (comB) [Haemophilus parainfluenzae T3T1]
ATGTTTAGCCTTAATTTATTACCTTGGCGCTTAGAACAACATCAAAAGGCCTTTCGTCGTTTTATGTGGCAAGGTTTCAT
TTGGCTAGCTTGCTCAGTTTTGATTGTCATTGGATTGAACCAACTCAATGAACAACAAGGGCAAGCCCTAAGTCAGACAA
AAGAAAAACTGACACAAATAACTCATCAAGTCCATCAGAAACGCATTCAGGTTCAGCAACTACAAAGTAGTCTGAAAGAA
ATGAATGAGCTGACAGAAATGGGTACAGAATATGTGTATCGCTTGCTTAATTTATTAAGTGAGCTGCCATTAAAACAGGG
CGAGTTAGATGAATTTACGCTCAATGCTAAGCAAATTGTCCTTTCAGGCATGACAGAAAGCCAACAAGAGTTTGAGGAGA
TACATCAATTTCTCAAACGCCATTTTACAGAGGTTAACTTAACTAAGTTTCAGCCAGTGCAACAGCAGTTATTTTTTCAA
TTTGATATTCATTTATCGGAGTCTGTGCAATGA
ATGTTTAGCCTTAATTTATTACCTTGGCGCTTAGAACAACATCAAAAGGCCTTTCGTCGTTTTATGTGGCAAGGTTTCAT
TTGGCTAGCTTGCTCAGTTTTGATTGTCATTGGATTGAACCAACTCAATGAACAACAAGGGCAAGCCCTAAGTCAGACAA
AAGAAAAACTGACACAAATAACTCATCAAGTCCATCAGAAACGCATTCAGGTTCAGCAACTACAAAGTAGTCTGAAAGAA
ATGAATGAGCTGACAGAAATGGGTACAGAATATGTGTATCGCTTGCTTAATTTATTAAGTGAGCTGCCATTAAAACAGGG
CGAGTTAGATGAATTTACGCTCAATGCTAAGCAAATTGTCCTTTCAGGCATGACAGAAAGCCAACAAGAGTTTGAGGAGA
TACATCAATTTCTCAAACGCCATTTTACAGAGGTTAACTTAACTAAGTTTCAGCCAGTGCAACAGCAGTTATTTTTTCAA
TTTGATATTCATTTATCGGAGTCTGTGCAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB | Haemophilus influenzae 86-028NP |
41.615 |
94.706 |
0.394 |
| comB | Haemophilus influenzae Rd KW20 |
40.994 |
94.706 |
0.388 |