Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   EPB61_RS12265 Genome accession   NZ_CP035696
Coordinates   1009035..1009667 (+) Length   210 a.a.
NCBI ID   WP_004728582.1    Uniprot ID   A0A7X4LI26
Organism   Vibrio furnissii strain 2419-04     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1004035..1014667
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EPB61_RS12245 - 1005953..1006426 (+) 474 WP_004728586.1 TIGR02444 family protein -
  EPB61_RS12250 - 1006554..1007531 (+) 978 WP_004728585.1 hydrolase -
  EPB61_RS12255 - 1007620..1007829 (+) 210 WP_143680282.1 YheU family protein -
  EPB61_RS12260 - 1007924..1008792 (+) 869 Protein_916 phosphoribulokinase -
  EPB61_RS12265 crp 1009035..1009667 (+) 633 WP_004728582.1 cAMP-activated global transcriptional regulator CRP Regulator
  EPB61_RS12270 - 1009750..1010544 (-) 795 WP_143680281.1 DUF1338 domain-containing protein -
  EPB61_RS12275 astD 1010730..1012186 (-) 1457 Protein_919 succinylglutamate-semialdehyde dehydrogenase -
  EPB61_RS12280 astA 1012220..1013239 (-) 1020 WP_004728579.1 arginine N-succinyltransferase -
  EPB61_RS12285 - 1013339..1014550 (-) 1212 WP_004728578.1 aspartate aminotransferase family protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23593.41 Da        Isoelectric Point: 8.2772

>NTDB_id=343817 EPB61_RS12265 WP_004728582.1 1009035..1009667(+) (crp) [Vibrio furnissii strain 2419-04]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSGQMARRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=343817 EPB61_RS12265 WP_004728582.1 1009035..1009667(+) (crp) [Vibrio furnissii strain 2419-04]
ATGGTTCTAGGTAAACCTCAAACCGACCCAACACTAGAGTGGTTTCTTTCACATTGTCACATTCATAAGTACCCTTCAAA
AAGCACGCTGATTCACGCGGGCGAGAAAGCAGAAACGTTGTACTACATCGTCAAAGGTTCTGTTGCGGTACTGATCAAAG
ATGAAGAAGGTAAGGAGATGATTCTGTCTTACCTCAACCAAGGTGACTTCATCGGTGAGCTTGGCTTGTTTGAAGAAGGT
CAGGAGCGTACTGCCTGGGTTCGTGCAAAATCTCCTTGTGAAGTAGCGGAAATTTCATTTAAGAAATTCCGTCAGCTGAT
TCAGGTTAACCCGGACATCCTGATGCGCCTGTCTGGTCAGATGGCTCGCCGTCTGCAAGTGACCAGCCAAAAAGTGGGTG
ACTTGGCGTTCTTAGACGTAACCGGTCGTATTGCACAGACCCTACTGAACTTGGCGAAACAACCCGACGCGATGACTCAC
CCAGACGGCATGCAGATTAAGATCACTCGTCAAGAGATTGGTCAAATCGTTGGCTGTTCACGTGAAACCGTGGGCCGCAT
CCTGAAGATGCTGGAAGAGCAGAACTTGATTTCTGCACACGGTAAAACCATCGTGGTGTACGGCACTCGTTAA

Domains

Predicted by InterproScan.

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7X4LI26

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

99.048

100

0.99
  crp Haemophilus influenzae Rd KW20

75.49

97.143

0.733
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467

Multiple sequence alignment