Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   EPB58_RS17455 Genome accession   NZ_CP035693
Coordinates   1582570..1583202 (-) Length   210 a.a.
NCBI ID   WP_005381432.1    Uniprot ID   U2ZZI4
Organism   Vibrio harveyi strain 2011V-1164     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1577570..1588202
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EPB58_RS17440 astA 1578820..1579839 (+) 1020 WP_005438349.1 arginine N-succinyltransferase -
  EPB58_RS17445 astD 1579868..1581325 (+) 1458 WP_050914763.1 succinylglutamate-semialdehyde dehydrogenase -
  EPB58_RS17450 - 1581590..1582381 (+) 792 WP_154203376.1 DUF1338 domain-containing protein -
  EPB58_RS17455 crp 1582570..1583202 (-) 633 WP_005381432.1 cAMP-activated global transcriptional regulator CRP Regulator
  EPB58_RS17460 - 1583442..1584311 (-) 870 WP_005438358.1 phosphoribulokinase -
  EPB58_RS17465 - 1584436..1584648 (-) 213 WP_005451451.1 YheU family protein -
  EPB58_RS17470 - 1584719..1585726 (-) 1008 WP_005451453.1 hydrolase -
  EPB58_RS17475 - 1585827..1586306 (-) 480 WP_029789495.1 TIGR02444 family protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23665.48 Da        Isoelectric Point: 7.8388

>NTDB_id=343780 EPB58_RS17455 WP_005381432.1 1582570..1583202(-) (crp) [Vibrio harveyi strain 2011V-1164]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEED
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSAQMARRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=343780 EPB58_RS17455 WP_005381432.1 1582570..1583202(-) (crp) [Vibrio harveyi strain 2011V-1164]
ATGGTTCTAGGTAAACCTCAAACCGACCCAACATTAGAGTGGTTTCTTTCACACTGTCATATTCATAAGTACCCATCAAA
GAGCACGCTAATTCACGCGGGCGAAAAAGCAGAGACTTTGTACTACATCGTTAAAGGTTCTGTTGCGGTTCTTATCAAAG
ACGAAGAAGGTAAGGAAATGATCCTTTCTTACCTAAACCAAGGCGACTTCATTGGTGAGCTTGGTCTATTCGAAGAAGAC
CAAGAGCGTACAGCTTGGGTTCGCGCTAAATCTCCTTGTGAAGTGGCAGAGATTTCTTTCAAGAAATTCCGTCAACTTAT
CCAAGTTAACCCAGACATCCTAATGCGTCTTTCAGCGCAAATGGCTCGTCGTCTACAAGTTACTAGCCAAAAAGTGGGTG
ACCTAGCGTTCCTAGACGTAACTGGTCGTATCGCTCAGACTCTTCTGAACCTTGCTAAACAACCAGATGCGATGACGCAC
CCAGACGGCATGCAAATCAAGATCACTCGTCAGGAAATCGGTCAAATCGTTGGCTGTTCTCGTGAGACAGTAGGTCGTAT
CTTGAAGATGCTAGAAGAGCAGAACCTAATTTCTGCGCACGGTAAGACTATCGTTGTTTACGGGACTCGTTAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB U2ZZI4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

98.095

100

0.981
  crp Haemophilus influenzae Rd KW20

75.49

97.143

0.733
  crp Acinetobacter baumannii D1279779

47.826

98.571

0.471

Multiple sequence alignment