Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   EWA65_RS10480 Genome accession   NZ_CP035688
Coordinates   2300281..2300913 (+) Length   210 a.a.
NCBI ID   WP_000242749.1    Uniprot ID   A0A6G8D3R0
Organism   Vibrio metoecus strain 08-2459     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2295281..2305913
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EWA65_RS10455 - 2295367..2297283 (+) 1917 WP_154138998.1 ABC transporter ATP-binding protein -
  EWA65_RS10460 - 2297284..2297769 (+) 486 WP_055051262.1 TIGR02444 family protein -
  EWA65_RS10465 - 2297766..2298755 (+) 990 WP_055027417.1 hydrolase -
  EWA65_RS10470 - 2298865..2299074 (+) 210 WP_055051264.1 YheU family protein -
  EWA65_RS10475 - 2299169..2300038 (+) 870 WP_001274669.1 phosphoribulokinase -
  EWA65_RS10480 crp 2300281..2300913 (+) 633 WP_000242749.1 cAMP-activated global transcriptional regulator CRP Regulator
  EWA65_RS10485 - 2300976..2301767 (-) 792 WP_154138999.1 DUF1338 domain-containing protein -
  EWA65_RS10490 astD 2301910..2303367 (-) 1458 WP_055027419.1 succinylglutamate-semialdehyde dehydrogenase -
  EWA65_RS10495 astA 2303377..2304396 (-) 1020 WP_000962048.1 arginine N-succinyltransferase -
  EWA65_RS10500 - 2304537..2305748 (-) 1212 WP_154139000.1 aspartate aminotransferase family protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23635.45 Da        Isoelectric Point: 8.2784

>NTDB_id=343704 EWA65_RS10480 WP_000242749.1 2300281..2300913(+) (crp) [Vibrio metoecus strain 08-2459]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERTAWVRAKTPCEVAEISFKKFRQLIQVNPDILMRLSGQMARRLQVTSQKVGDLAFLDVTGRIAQTLLNLARQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=343704 EWA65_RS10480 WP_000242749.1 2300281..2300913(+) (crp) [Vibrio metoecus strain 08-2459]
ATGGTTCTAGGTAAACCTCAAACCGATCCAACACTAGAGTGGTTTCTTTCACATTGTCACATTCATAAGTACCCATCAAA
AAGCACACTGATCCACGCGGGTGAGAAAGCGGAAACGCTGTACTACATCGTAAAAGGTTCAGTTGCGGTACTGATCAAAG
ATGAAGAAGGTAAAGAGATGATTCTCTCTTACCTGAACCAAGGTGATTTTATCGGTGAGCTTGGCTTGTTTGAAGAAGGC
CAAGAGCGTACCGCTTGGGTTCGTGCTAAAACACCTTGTGAAGTGGCTGAAATCTCATTTAAGAAATTCCGTCAATTGAT
CCAAGTAAACCCAGATATCTTGATGCGCCTTTCAGGTCAAATGGCTCGTCGTCTGCAAGTGACCAGCCAAAAAGTTGGCG
ACCTTGCGTTCCTAGACGTAACTGGCCGTATCGCACAGACTCTGCTGAACCTTGCACGTCAGCCAGATGCGATGACTCAC
CCTGATGGTATGCAAATCAAGATCACTCGCCAAGAGATCGGTCAAATTGTTGGCTGTTCTCGTGAAACCGTTGGCCGCAT
CCTGAAGATGCTGGAAGAGCAGAACCTGATCTCTGCCCACGGTAAAACCATCGTGGTTTATGGCACTCGCTAA

Domains

Predicted by InterproScan.

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G8D3R0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

100

100

1
  crp Haemophilus influenzae Rd KW20

75.49

97.143

0.733
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467

Multiple sequence alignment