Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   GB851_RS03490 Genome accession   NZ_CP045141
Coordinates   677487..678110 (+) Length   207 a.a.
NCBI ID   WP_019389290.1    Uniprot ID   -
Organism   Kingella kingae strain F41215CHC     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 672487..683110
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GB851_RS03465 (GB851_03580) - 673575..674372 (-) 798 WP_038319971.1 polyamine aminopropyltransferase -
  GB851_RS03470 (GB851_03585) - 674511..675293 (-) 783 WP_038319972.1 NUDIX domain-containing protein -
  GB851_RS03475 (GB851_03590) - 675379..676275 (+) 897 WP_032134104.1 recombination-associated protein RdgC -
  GB851_RS03480 (GB851_03595) - 676362..676754 (+) 393 WP_032134103.1 hypothetical protein -
  GB851_RS03485 (GB851_03600) dcd 676764..677330 (+) 567 WP_003786442.1 dCTP deaminase -
  GB851_RS03490 (GB851_03610) recR 677487..678110 (+) 624 WP_019389290.1 recombination mediator RecR Machinery gene
  GB851_RS03495 (GB851_03615) - 678107..678541 (+) 435 WP_223877607.1 hypothetical protein -
  GB851_RS10740 - 678596..678748 (+) 153 WP_223877606.1 hypothetical protein -
  GB851_RS03500 (GB851_03620) - 678820..679014 (+) 195 WP_003790680.1 hypothetical protein -
  GB851_RS03505 (GB851_03630) - 679169..679618 (+) 450 WP_003790679.1 GatB/YqeY domain-containing protein -
  GB851_RS03510 (GB851_03635) cmk 679629..680285 (+) 657 WP_003786432.1 (d)CMP kinase -
  GB851_RS03515 (GB851_03640) rpsA 680413..682086 (+) 1674 WP_003790677.1 30S ribosomal protein S1 -
  GB851_RS03520 (GB851_03645) - 682103..682408 (+) 306 WP_003790675.1 integration host factor subunit beta -
  GB851_RS03525 (GB851_03650) acpS 682493..682870 (-) 378 WP_003790673.1 holo-ACP synthase -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 22856.14 Da        Isoelectric Point: 5.2093

>NTDB_id=343695 GB851_RS03490 WP_019389290.1 677487..678110(+) (recR) [Kingella kingae strain F41215CHC]
MSDPNQIDAYSNLIHALRVLPNVGVKTAQRMAFTLLQQNRDGAAQLLSALDLALKQIHNCQLCNTFCQDDLCHTCADPRR
DSRRLMIVHMPADVSAMELARCHDGLYFVLMGQVSPTQDMDLSHIALDKLVARIAQHPVDEIIIATAFTAEGDATAYVLS
ELFANQPYKISRLARGMPLGSELEYVDAGTLAQAVYERQLLQNGESS

Nucleotide


Download         Length: 624 bp        

>NTDB_id=343695 GB851_RS03490 WP_019389290.1 677487..678110(+) (recR) [Kingella kingae strain F41215CHC]
ATGTCCGACCCCAATCAAATTGACGCTTATTCCAACCTAATCCATGCGCTGCGCGTGTTGCCCAATGTGGGCGTGAAAAC
CGCACAGCGCATGGCGTTTACCTTGCTGCAACAAAACCGCGATGGTGCAGCACAACTCTTGTCTGCGCTGGATTTGGCGT
TAAAGCAAATCCACAACTGCCAGCTATGCAACACGTTTTGCCAAGACGATTTGTGCCACACTTGCGCCGACCCGCGCCGA
GATTCGCGCCGTTTGATGATTGTGCATATGCCTGCCGATGTGTCGGCAATGGAATTGGCACGTTGTCATGACGGCTTGTA
TTTTGTGTTGATGGGACAAGTCAGCCCCACGCAAGACATGGATTTGAGCCACATTGCGCTAGACAAATTGGTCGCGCGAA
TCGCCCAACATCCTGTGGACGAAATCATCATCGCCACCGCATTCACAGCCGAGGGCGATGCCACGGCGTATGTTTTGTCG
GAATTGTTTGCTAATCAACCATATAAAATCAGTCGTTTAGCGCGTGGTATGCCACTGGGCAGCGAGCTGGAATATGTGGA
CGCTGGCACGTTGGCGCAGGCGGTATATGAACGCCAGTTGCTGCAAAACGGAGAGTCGTCATGA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(43-81)

Toprim domain (Toprim_4)

(84-174)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

40.104

92.754

0.372

Multiple sequence alignment