Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD   Type   Machinery gene
Locus tag   GB851_RS03460 Genome accession   NZ_CP045141
Coordinates   671857..673578 (-) Length   573 a.a.
NCBI ID   WP_164538104.1    Uniprot ID   -
Organism   Kingella kingae strain F41215CHC     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 666857..678578
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GB851_RS03455 (GB851_03570) purM 670671..671708 (-) 1038 WP_164538103.1 phosphoribosylformylglycinamidine cyclo-ligase -
  GB851_RS03460 (GB851_03575) recD 671857..673578 (-) 1722 WP_164538104.1 exodeoxyribonuclease V subunit alpha Machinery gene
  GB851_RS03465 (GB851_03580) - 673575..674372 (-) 798 WP_038319971.1 polyamine aminopropyltransferase -
  GB851_RS03470 (GB851_03585) - 674511..675293 (-) 783 WP_038319972.1 NUDIX domain-containing protein -
  GB851_RS03475 (GB851_03590) - 675379..676275 (+) 897 WP_032134104.1 recombination-associated protein RdgC -
  GB851_RS03480 (GB851_03595) - 676362..676754 (+) 393 WP_032134103.1 hypothetical protein -
  GB851_RS03485 (GB851_03600) dcd 676764..677330 (+) 567 WP_003786442.1 dCTP deaminase -
  GB851_RS03490 (GB851_03610) recR 677487..678110 (+) 624 WP_019389290.1 recombination mediator RecR Machinery gene
  GB851_RS03495 (GB851_03615) - 678107..678541 (+) 435 WP_223877607.1 hypothetical protein -

Sequence

Protein


Download         Length: 573 a.a.        Molecular weight: 62535.88 Da        Isoelectric Point: 6.5456

>NTDB_id=343694 GB851_RS03460 WP_164538104.1 671857..673578(-) (recD) [Kingella kingae strain F41215CHC]
MNPQDTHTETELDLSPAAQAVCELFARIAPDVADSVAPFVQRLFAASANGDTFVYVSHSDVALLQQAAPLVGNDDRSPLV
LDGKRLFLAKSWHLERELAAQIQRLSQQECRLPAPDIITPKLQTWFADAGSHDQQAACTLALIKPFVLISGGPGTGKTTT
VAKLLALLCDEAALPRIALVAPTGKAAARLSQALRGALSRMTDLSPAIAAHLNALDGQTAHRLLGIKPPTLNAEYDSNNP
LVLDMVLIDEASMLDNYLFYQLLCALPDTCRVVLLGDADQLPSVGAGAILTALSTQSQVQAATLAQLQRYLPTRSDWCTV
AEQFARLTLSHRFDAKSGIGQFAAAIRTGSLHHSDDVAQLFAQFPQVLSQQHGSAKQLAEQMWQQHRDYWQAIDAGDVQA
AFAWQNRLIALTALRFDAQQINQAYRQIAQQHQRVSSSDTWFAGQMLLITRNAPAQKLYNGDVGIVMQPAQSKGLVACFP
DENVGYRTVPLSRLPEHESAFAMTVHKSQGSEYDSVWYFAPSHSTASRALLYTAVTRAKQQFVYWGDLDSAVQASQHHVP
RQTGLANFLQADR

Nucleotide


Download         Length: 1722 bp        

>NTDB_id=343694 GB851_RS03460 WP_164538104.1 671857..673578(-) (recD) [Kingella kingae strain F41215CHC]
ATGAATCCGCAAGATACCCACACCGAAACCGAATTAGACCTGTCGCCAGCCGCGCAAGCCGTGTGTGAACTGTTTGCACG
CATTGCGCCCGATGTTGCCGACAGCGTTGCGCCGTTTGTGCAACGATTGTTTGCCGCCAGCGCAAATGGCGATACGTTTG
TTTACGTTAGCCACAGCGATGTCGCTCTATTGCAGCAAGCCGCGCCATTGGTGGGCAATGATGACCGCAGTCCGCTGGTG
TTGGACGGCAAACGCTTGTTTTTGGCAAAATCGTGGCATTTGGAACGCGAACTTGCCGCGCAAATCCAACGCCTATCGCA
ACAAGAATGCAGGCTGCCTGCGCCCGATATCATCACGCCTAAATTGCAAACGTGGTTTGCCGATGCAGGCAGCCACGACC
AGCAAGCAGCCTGCACTTTGGCGTTGATTAAACCATTTGTGTTGATTAGCGGTGGGCCGGGCACAGGCAAAACCACCACC
GTTGCCAAATTGCTGGCTTTGCTGTGCGATGAAGCCGCCTTACCGCGCATTGCATTGGTTGCGCCCACAGGCAAAGCCGC
AGCGCGTTTATCACAAGCCCTGCGTGGCGCATTGTCGCGCATGACCGATTTATCGCCAGCCATTGCCGCACATTTGAATG
CTTTGGACGGACAAACCGCGCACCGTTTATTGGGGATTAAACCGCCCACGCTGAACGCAGAATACGACAGCAACAACCCA
CTTGTGTTGGATATGGTGTTGATTGACGAAGCGTCTATGTTGGATAACTATTTGTTTTATCAACTGCTTTGCGCTTTGCC
CGATACTTGCCGCGTGGTGTTGCTGGGCGATGCCGACCAACTGCCATCGGTGGGTGCAGGTGCGATTTTGACCGCGCTGT
CCACGCAATCACAAGTGCAGGCTGCTACGTTGGCGCAACTGCAACGCTACTTGCCCACACGCAGCGATTGGTGCACCGTT
GCCGAACAATTCGCGCGTTTAACATTAAGCCATCGTTTTGATGCAAAAAGTGGCATTGGACAATTTGCCGCCGCCATTCG
CACAGGCAGCCTGCACCACAGTGATGACGTAGCGCAACTGTTCGCCCAGTTCCCACAAGTCTTGTCGCAGCAACACGGTT
CAGCCAAACAACTCGCCGAGCAAATGTGGCAACAACACCGCGACTATTGGCAAGCGATAGACGCTGGCGATGTGCAGGCT
GCTTTTGCGTGGCAAAACCGCTTAATCGCGCTAACGGCGTTGCGTTTTGACGCACAACAAATCAACCAAGCCTATCGCCA
AATCGCGCAACAACATCAGCGCGTATCCAGCAGCGACACTTGGTTTGCAGGACAAATGTTGTTGATTACACGCAACGCGC
CTGCCCAAAAACTGTATAACGGTGATGTCGGTATTGTCATGCAGCCTGCACAATCCAAAGGCTTGGTTGCGTGTTTTCCC
GATGAAAACGTAGGCTACCGCACCGTGCCATTGAGCCGTTTGCCCGAACACGAATCCGCCTTTGCGATGACGGTTCACAA
AAGTCAAGGCTCGGAATACGACAGCGTGTGGTATTTTGCGCCGAGTCACAGCACCGCCAGTCGCGCCTTGCTCTACACCG
CCGTAACCCGAGCCAAACAACAATTTGTGTATTGGGGCGATTTAGATAGCGCGGTTCAAGCCAGCCAACACCATGTGCCA
CGCCAAACAGGATTGGCGAATTTTTTGCAGGCAGATAGGTAA

Domains

Predicted by InterProScan.

AAA domain (AAA_30)

(131-319)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(500-541)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD Neisseria gonorrhoeae MS11

41.25

97.731

0.403
  recD Neisseria gonorrhoeae strain FA1090

41.071

97.731

0.401