Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsS   Type   Regulator
Locus tag   EPB59_RS13955 Genome accession   NZ_CP035687
Coordinates   85466..87526 (+) Length   686 a.a.
NCBI ID   WP_154173344.1    Uniprot ID   -
Organism   Vibrio metoecus strain 2011V-1169     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 80466..92526
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EPB59_RS13945 - 81184..82323 (+) 1140 WP_154173340.1 exonuclease SbcCD subunit D -
  EPB59_RS13950 - 82325..85366 (+) 3042 WP_154173342.1 SMC family ATPase -
  EPB59_RS13955 cqsS 85466..87526 (+) 2061 WP_154173344.1 quorum-sensing CAI-1 autoinducer sensor kinase/phosphatase CqsS Regulator
  EPB59_RS13960 cqsA 87576..88745 (-) 1170 WP_154173346.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  EPB59_RS13965 - 88942..89904 (-) 963 WP_055049825.1 TDT family transporter -
  EPB59_RS13970 clcA 90008..91414 (-) 1407 WP_154173348.1 H(+)/Cl(-) exchange transporter ClcA -

Sequence

Protein


Download         Length: 686 a.a.        Molecular weight: 78196.18 Da        Isoelectric Point: 5.1243

>NTDB_id=343670 EPB59_RS13955 WP_154173344.1 85466..87526(+) (cqsS) [Vibrio metoecus strain 2011V-1169]
MTASMDVIKKVYQYAEPNLSLVGWMGMLGFPAYYFIWEYWFPQVYENLGLRCAAAVLFSGLAFRGSFPKKWQRYMPHYFL
LTIGFCLPFFFCFMMLMNDWSTIWAMSFMASIFLHILLVHDTKVMALQAIFSVLMAYLAVYGFTDFRPSTLIEWPYIPVF
LFTYVFGNLCFFRNQISHETKVSIAKTFGAGIAHEMRNPLSALKTSIDVIRTMIPKPQAAAQSAYPLDAQELDLLHQILN
EADEVIYSGNNTIDLLLTSIDENRVSTASFKKYPAADVIEKALKTFPYKNVADQHAVQLEVIQPFDFFGSDTLLSYALFN
LLKNAFYYQKEQFSVRIQIEQSDECNLIKVRDNGVGIASEMLEDIFRDFYTFGKNGSYGLGLPFCRKVMTAFGGSIRCFS
QQGEWTEFVLAFPRYDSDVVQDIKSDLLKSKSLIYIGSNQAIVRELNQLALEDEFKFTAISAVQAVKRQDYEFEFDLILL
DLDEATAQGELLPKLEGTLSFAEGCIGYVYDPAKEYAVNINRYLHIQPISIHAVLRKPRSIIDRLLFEQDSLLMNRNAIP
VQKSRHERRILVVDDNQSIRTFTSILLEQQGYEVIQANDGSEVLTHMDEHAIDLVLMDIEMPNVGGLEATHLIRSSDRAY
KNVPIIGYTGDNSPKTLALIQTSGMNDFIVKPADRDVLLNKVAAWV

Nucleotide


Download         Length: 2061 bp        

>NTDB_id=343670 EPB59_RS13955 WP_154173344.1 85466..87526(+) (cqsS) [Vibrio metoecus strain 2011V-1169]
GTGACGGCGAGCATGGATGTGATAAAGAAAGTTTACCAGTACGCGGAACCCAATCTGTCTTTAGTCGGATGGATGGGGAT
GCTTGGCTTTCCAGCCTACTATTTCATTTGGGAATACTGGTTTCCACAAGTCTATGAAAACTTAGGTTTGCGTTGTGCTG
CAGCGGTACTGTTTTCTGGGTTGGCGTTTCGTGGGTCATTCCCTAAAAAATGGCAGCGCTACATGCCGCACTATTTTTTG
TTGACTATAGGCTTCTGCTTACCTTTTTTCTTTTGTTTCATGATGTTGATGAACGATTGGTCAACGATTTGGGCCATGTC
ATTCATGGCATCAATATTTCTGCATATCTTACTCGTGCATGATACAAAAGTGATGGCACTACAAGCCATCTTCTCTGTGT
TGATGGCATACCTTGCTGTGTATGGTTTTACGGATTTTCGTCCCTCTACCTTGATTGAGTGGCCGTATATTCCGGTTTTC
TTGTTTACTTATGTTTTTGGCAATCTGTGTTTCTTTCGTAACCAGATTTCTCACGAAACCAAAGTATCGATTGCTAAAAC
CTTTGGTGCAGGGATTGCTCATGAGATGCGTAATCCACTCAGTGCACTAAAAACGTCTATCGATGTTATTCGTACCATGA
TCCCAAAGCCACAAGCCGCGGCGCAATCTGCATACCCACTGGATGCGCAAGAGCTGGATCTATTACACCAGATTTTGAAT
GAAGCGGATGAGGTTATTTACTCTGGTAATAACACCATTGATTTATTGCTGACATCGATCGACGAAAACCGAGTCTCTAC
CGCGAGTTTTAAAAAATACCCTGCAGCAGACGTCATCGAAAAAGCCTTGAAAACGTTCCCGTATAAAAATGTGGCGGATC
AGCATGCTGTTCAGCTTGAAGTTATCCAACCGTTTGATTTTTTTGGTAGTGATACGCTATTGAGCTATGCATTATTTAAC
TTATTGAAAAATGCCTTTTATTACCAGAAAGAACAATTTTCTGTGCGAATTCAGATTGAGCAAAGCGACGAATGTAACCT
GATTAAAGTCCGCGATAACGGTGTCGGGATCGCGTCTGAGATGTTGGAAGATATTTTCCGTGATTTTTATACTTTCGGTA
AAAACGGTAGTTATGGGCTTGGCTTGCCATTTTGTCGGAAAGTCATGACCGCTTTTGGCGGCAGTATTCGTTGTTTTTCA
CAGCAAGGTGAATGGACAGAGTTTGTACTGGCGTTCCCTCGTTATGATTCTGATGTGGTACAAGACATTAAATCGGATTT
ATTAAAGTCTAAGTCTTTGATTTATATTGGCTCAAATCAAGCAATTGTTCGAGAGCTCAATCAATTAGCACTAGAAGATG
AGTTTAAATTCACGGCTATTTCTGCTGTACAGGCAGTGAAACGCCAAGATTACGAATTTGAGTTTGATCTGATTTTGCTG
GATTTGGATGAGGCAACAGCGCAAGGAGAATTACTTCCTAAGTTGGAAGGCACACTAAGTTTTGCAGAAGGCTGCATTGG
CTATGTATATGATCCGGCTAAAGAGTATGCAGTCAATATCAACCGATACTTACATATTCAACCGATCAGTATCCATGCTG
TGCTTCGTAAACCCCGAAGCATCATCGATCGTTTATTGTTTGAACAAGATTCATTGTTGATGAATCGTAACGCGATTCCT
GTGCAGAAAAGTCGCCATGAGCGGCGAATTCTGGTGGTGGATGATAATCAATCCATCCGCACTTTTACGTCGATCCTACT
TGAGCAACAAGGATACGAAGTGATACAAGCGAATGATGGCAGCGAAGTCCTTACTCATATGGATGAACACGCGATTGATC
TGGTGTTGATGGATATCGAAATGCCGAATGTCGGGGGGCTAGAGGCAACCCACTTAATTCGCAGTTCTGATCGCGCTTAT
AAAAACGTCCCTATCATAGGTTATACCGGTGATAACAGCCCTAAGACGCTAGCGTTGATACAGACGTCGGGGATGAATGA
TTTTATTGTTAAACCCGCAGATCGTGATGTATTACTCAATAAAGTTGCAGCTTGGGTCTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(570-682)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(313-413)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsS Vibrio cholerae strain A1552

87.318

100

0.873

Multiple sequence alignment