Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   EPB59_RS13960 Genome accession   NZ_CP035687
Coordinates   87576..88745 (-) Length   389 a.a.
NCBI ID   WP_154173346.1    Uniprot ID   -
Organism   Vibrio metoecus strain 2011V-1169     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 82576..93745
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EPB59_RS13955 cqsS 85466..87526 (+) 2061 WP_154173344.1 quorum-sensing CAI-1 autoinducer sensor kinase/phosphatase CqsS Regulator
  EPB59_RS13960 cqsA 87576..88745 (-) 1170 WP_154173346.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  EPB59_RS13965 - 88942..89904 (-) 963 WP_055049825.1 TDT family transporter -
  EPB59_RS13970 clcA 90008..91414 (-) 1407 WP_154173348.1 H(+)/Cl(-) exchange transporter ClcA -
  EPB59_RS13975 - 91873..92862 (+) 990 WP_154173350.1 GTP-binding protein -

Sequence

Protein


Download         Length: 389 a.a.        Molecular weight: 43710.91 Da        Isoelectric Point: 6.4948

>NTDB_id=343671 EPB59_RS13960 WP_154173346.1 87576..88745(-) (cqsA) [Vibrio metoecus strain 2011V-1169]
MNRPQLPDFIQDKINHYIENYFDINKNGKHLVLGKHASNDDIILQSNDYLALANHPLIKARLAKSLLEEQQSLFMSASFL
QNDYDKPLLEKRLAKFTGFDECLLSQSGWNANVGLLQTICQPNTNVYIDFFAHMSLWEGIRYANAQAHPFMHNNCDHLRM
LIQRHGPGIIVVDSIYSTIGTIAPLTELVKISQEFGCALVVDESHSLGTHGPKGAGLLAELNLTSHVHFMTASLAKTFAY
RAGAIWCNNEVNRCVPFISYPAIFSSTLLPYEAAGLETTLEIIQCADNKREHLERMARKLRIGLTQLGITIRSESQIIGL
ETGDERNTEKVRDFLENNGVFGSVFCRPATSKNKNIIRLSLNSDVTEEEISKIIEVCSDAVKCGDFYFR

Nucleotide


Download         Length: 1170 bp        

>NTDB_id=343671 EPB59_RS13960 WP_154173346.1 87576..88745(-) (cqsA) [Vibrio metoecus strain 2011V-1169]
ATGAACAGACCACAACTTCCTGATTTTATTCAGGATAAGATTAATCACTATATTGAAAATTATTTTGATATAAACAAAAA
TGGTAAACACCTCGTATTAGGTAAACATGCCAGCAATGATGACATTATTTTGCAAAGTAATGATTATTTAGCATTAGCGA
ATCACCCATTGATTAAAGCTCGCTTAGCTAAATCATTACTGGAAGAACAACAAAGTTTATTTATGTCAGCATCATTTTTA
CAAAATGATTATGACAAACCACTGCTTGAAAAACGCTTAGCCAAGTTCACGGGGTTTGATGAGTGTTTATTATCTCAGTC
AGGTTGGAACGCGAATGTGGGTTTACTGCAGACCATCTGCCAACCCAATACGAATGTCTACATCGATTTCTTTGCTCACA
TGTCATTATGGGAAGGAATACGCTACGCCAATGCGCAAGCGCACCCTTTTATGCACAACAACTGTGACCACTTGCGCATG
CTGATTCAACGTCATGGGCCTGGAATCATCGTGGTCGATTCGATTTACAGCACCATTGGGACTATTGCTCCATTAACTGA
GTTGGTAAAAATTAGTCAGGAGTTTGGTTGCGCTTTAGTGGTGGATGAGTCCCACTCACTAGGCACGCATGGACCTAAAG
GTGCAGGATTATTAGCTGAATTGAATCTCACCTCACATGTCCATTTTATGACTGCCAGCCTAGCAAAAACGTTTGCTTAT
CGCGCTGGAGCCATCTGGTGTAATAATGAAGTCAATCGATGCGTTCCTTTTATTAGTTATCCAGCCATCTTCAGCTCAAC
GTTACTGCCCTATGAAGCTGCTGGATTAGAAACTACATTAGAGATTATTCAATGTGCCGATAATAAACGGGAGCACTTAG
AACGTATGGCAAGAAAATTACGGATTGGATTAACCCAATTAGGAATAACGATTCGTAGTGAAAGTCAGATTATTGGCTTG
GAAACCGGTGATGAGAGAAATACGGAAAAGGTTCGTGATTTTTTAGAAAATAATGGCGTTTTTGGTTCTGTATTTTGTCG
TCCTGCAACCTCAAAAAACAAGAACATTATTCGCTTATCGCTCAATAGTGATGTGACTGAAGAAGAGATTTCAAAAATAA
TTGAAGTTTGTTCTGATGCAGTGAAATGTGGTGATTTCTACTTTCGATAG

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(41-375)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

91.774

100

0.918

Multiple sequence alignment