Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   EPB59_RS04130 Genome accession   NZ_CP035686
Coordinates   876369..878612 (+) Length   747 a.a.
NCBI ID   WP_195707049.1    Uniprot ID   -
Organism   Vibrio metoecus strain 2011V-1169     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 871369..883612
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EPB59_RS04105 - 871793..872368 (-) 576 WP_154171629.1 PilZ domain-containing protein -
  EPB59_RS04110 lolC 872544..873752 (+) 1209 WP_055051086.1 lipoprotein-releasing ABC transporter permease subunit LolC -
  EPB59_RS04115 lolD 873745..874431 (+) 687 WP_114773121.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  EPB59_RS04120 lolE 874432..875676 (+) 1245 WP_154171630.1 lipoprotein-releasing ABC transporter permease subunit LolE -
  EPB59_RS04125 - 875830..876360 (-) 531 WP_055051087.1 DUF2062 domain-containing protein -
  EPB59_RS04130 comEC 876369..878612 (+) 2244 WP_195707049.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  EPB59_RS04135 msbA 878643..880391 (+) 1749 WP_154171632.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  EPB59_RS04140 lpxK 880394..881401 (+) 1008 WP_195707050.1 tetraacyldisaccharide 4'-kinase -
  EPB59_RS04145 - 881382..881561 (+) 180 WP_000350068.1 Trm112 family protein -
  EPB59_RS04150 kdsB 881561..882319 (+) 759 WP_154171634.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 747 a.a.        Molecular weight: 84888.18 Da        Isoelectric Point: 8.3870

>NTDB_id=343644 EPB59_RS04130 WP_195707049.1 876369..878612(+) (comEC) [Vibrio metoecus strain 2011V-1169]
MTLLSNYWSLISFSITLLSAPYWPWMPTWGWAWFCLILIGVLSYYRACRKLLGFALAIFTVVCHGNLMRDQSNLLSQAGS
DSIIKGQVDSFFTQTRYAYEGLVLIHEVNGQTLNRLMWPRVRLTAPVALKPNEQFEFTVSFKPIVGRLNETGFDLEAHSL
TQSVLARAVVSPNTTYHIVPQHSLRSALLAELELLTQNSPYQGLILALTFGERKGIGEQDWQVLRNSGLIHLVAISGLHI
GIAFSIGYLLGTGLMRLHGKLLWSPFVVGALLAVLYAWLAGFTIPTQRALIMCMLNVGLVILGFPLSALKRILLTLCAVL
VWSPFASLSNSFWMSFLAVAIVLYQLANQEKRQAWWKALLWAQLTLVCLMAPVTAYFFGGLSMTSVVYNLLFIPWFSVVI
VPALFVGLFLSVTMWYWATLYWPWVDWTFYPLDWALQFADVGWVVIPKTVQGFVAAFIVICLLYRVMSLRACILAWCLAG
LWWWFPSVTPRWRMDVLDVGHGLAIIIEQDKRAIVYDTGSSWPGGSYVESLIEPILQQRGIRQLDGLILSHLDNDHAGDW
QSLAKRWQPDWIRASQADVAFMPCIRGERWQWQSLDFQVLWPPRLVNRAYNQHSCVIRMTDLQSHYSVLLSGDVTAMGEW
LLARGGTLLSSEVMIVPHHGSKTSSTAEFIAKVEPRLAIASLAKDNRWNLPNPQVVERYQSQQSDWLDTGQAGQISLFFY
PDQFDWFTQRGLGWVPWYRQMLRKGVE

Nucleotide


Download         Length: 2244 bp        

>NTDB_id=343644 EPB59_RS04130 WP_195707049.1 876369..878612(+) (comEC) [Vibrio metoecus strain 2011V-1169]
ATGACTCTCTTGTCGAATTACTGGTCGCTTATCTCTTTTTCGATCACCTTGCTTTCTGCACCGTATTGGCCTTGGATGCC
GACATGGGGCTGGGCTTGGTTTTGCCTTATCCTGATTGGCGTGCTCAGTTATTACCGAGCTTGCCGCAAACTCCTTGGCT
TCGCGTTGGCCATATTCACTGTCGTGTGCCATGGCAACCTAATGCGAGATCAATCCAACCTGCTCTCTCAAGCAGGCTCG
GATAGTATCATAAAAGGTCAGGTTGACAGCTTTTTTACGCAAACTCGTTACGCATATGAGGGTTTAGTCTTAATTCATGA
GGTGAATGGTCAAACCTTAAACAGACTGATGTGGCCTCGTGTACGTTTAACGGCTCCTGTAGCGTTAAAACCGAATGAGC
AATTCGAATTTACAGTTTCATTTAAGCCGATTGTGGGACGTCTTAATGAAACTGGCTTTGATTTGGAAGCCCACTCTCTG
ACTCAATCGGTTCTGGCGCGAGCGGTTGTCAGCCCGAATACGACTTACCACATTGTGCCACAACATAGCCTACGCTCCGC
TTTACTGGCGGAGCTTGAGTTACTCACCCAAAACAGCCCTTATCAAGGGTTGATATTAGCGCTGACGTTTGGTGAAAGAA
AAGGGATTGGTGAACAAGACTGGCAAGTCTTGCGCAATAGCGGCCTAATCCACTTGGTGGCGATTTCTGGGTTGCATATC
GGTATCGCTTTCAGTATCGGGTATTTGCTAGGCACCGGGCTGATGCGCTTGCATGGTAAATTGTTGTGGTCTCCTTTCGT
GGTGGGCGCATTATTGGCTGTGTTATACGCATGGCTCGCGGGGTTCACTATACCAACCCAACGTGCACTGATCATGTGCA
TGCTGAATGTGGGATTGGTGATCTTGGGCTTTCCTCTTTCAGCATTAAAACGGATCCTGCTGACGCTGTGTGCGGTTTTA
GTTTGGTCGCCCTTTGCCTCGCTTTCAAACAGCTTTTGGATGTCATTTTTAGCCGTTGCGATTGTATTGTATCAATTGGC
TAATCAAGAGAAGCGTCAGGCTTGGTGGAAGGCCTTACTGTGGGCGCAATTGACCCTTGTCTGCTTAATGGCGCCTGTCA
CGGCATACTTTTTCGGTGGATTAAGCATGACGTCCGTGGTGTACAATTTGCTGTTTATCCCTTGGTTCTCCGTGGTGATT
GTTCCCGCTCTGTTTGTGGGTTTGTTTCTTAGCGTGACAATGTGGTATTGGGCGACGCTTTATTGGCCTTGGGTAGACTG
GACGTTTTACCCTCTCGATTGGGCACTGCAGTTTGCGGATGTAGGATGGGTGGTGATACCGAAAACCGTACAAGGTTTCG
TTGCTGCCTTTATCGTGATCTGTTTGTTGTACCGAGTGATGAGCTTACGCGCCTGCATTTTGGCATGGTGCCTTGCTGGG
CTGTGGTGGTGGTTTCCTTCAGTCACTCCACGGTGGCGGATGGATGTTTTGGATGTCGGACACGGTTTAGCGATCATTAT
TGAGCAAGATAAGCGCGCGATTGTCTACGATACGGGCAGCAGTTGGCCCGGAGGCAGCTACGTCGAGAGTCTCATCGAAC
CCATTTTGCAGCAGCGCGGTATACGCCAGCTCGATGGACTGATTCTGAGTCACCTCGATAATGATCACGCTGGAGATTGG
CAAAGCTTGGCTAAGCGTTGGCAGCCTGATTGGATACGTGCAAGTCAAGCTGATGTGGCGTTTATGCCTTGTATACGGGG
TGAACGTTGGCAGTGGCAGTCATTAGATTTCCAAGTGCTATGGCCTCCGAGGTTGGTGAATCGAGCCTATAATCAGCATT
CGTGTGTGATTCGCATGACCGATCTCCAATCTCACTATTCCGTTTTGTTATCTGGGGATGTCACCGCCATGGGAGAATGG
CTACTTGCTCGTGGAGGAACGCTTTTATCGAGCGAAGTGATGATAGTGCCTCATCACGGCAGCAAAACCTCATCCACCGC
TGAGTTTATTGCGAAAGTCGAACCACGATTGGCGATTGCTTCTCTTGCCAAAGATAACCGCTGGAATTTGCCTAACCCGC
AAGTGGTGGAACGTTATCAAAGCCAGCAATCTGATTGGCTAGATACTGGTCAAGCAGGGCAAATCAGTCTGTTTTTCTAT
CCAGATCAGTTTGATTGGTTTACTCAGCGTGGACTTGGCTGGGTGCCATGGTATAGGCAGATGCTGCGTAAAGGAGTAGA
ATGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(208-464)

Metallo-beta-lactamase superfamily (Lactamase_B)

(499-661)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Vibrio cholerae strain A1552

78.313

100

0.783
  comEC Vibrio parahaemolyticus RIMD 2210633

42.084

100

0.427
  comEC Vibrio campbellii strain DS40M4

41.06

100

0.415

Multiple sequence alignment