Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   EPB59_RS00500 Genome accession   NZ_CP035686
Coordinates   111064..111696 (-) Length   210 a.a.
NCBI ID   WP_000242749.1    Uniprot ID   A0A6G8D3R0
Organism   Vibrio metoecus strain 2011V-1169     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 106064..116696
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EPB59_RS00480 - 106229..107440 (+) 1212 WP_055051266.1 aspartate aminotransferase family protein -
  EPB59_RS00485 astA 107581..108600 (+) 1020 WP_113597296.1 arginine N-succinyltransferase -
  EPB59_RS00490 astD 108610..110067 (+) 1458 WP_154171307.1 succinylglutamate-semialdehyde dehydrogenase -
  EPB59_RS00495 - 110210..111001 (+) 792 WP_154171308.1 DUF1338 domain-containing protein -
  EPB59_RS00500 crp 111064..111696 (-) 633 WP_000242749.1 cAMP-activated global transcriptional regulator CRP Regulator
  EPB59_RS00505 - 111939..112808 (-) 870 WP_001274669.1 phosphoribulokinase -
  EPB59_RS00510 - 112903..113112 (-) 210 WP_148548240.1 YheU family protein -
  EPB59_RS00515 - 113222..114211 (-) 990 WP_154171309.1 hydrolase -
  EPB59_RS00520 - 114208..114693 (-) 486 WP_055051262.1 TIGR02444 family protein -
  EPB59_RS00525 - 114694..116610 (-) 1917 WP_154171310.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23635.45 Da        Isoelectric Point: 8.2784

>NTDB_id=343635 EPB59_RS00500 WP_000242749.1 111064..111696(-) (crp) [Vibrio metoecus strain 2011V-1169]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERTAWVRAKTPCEVAEISFKKFRQLIQVNPDILMRLSGQMARRLQVTSQKVGDLAFLDVTGRIAQTLLNLARQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=343635 EPB59_RS00500 WP_000242749.1 111064..111696(-) (crp) [Vibrio metoecus strain 2011V-1169]
ATGGTTCTAGGTAAACCTCAAACCGATCCAACACTAGAGTGGTTTCTTTCACATTGTCACATTCATAAGTACCCATCAAA
AAGCACACTGATCCACGCGGGTGAGAAAGCGGAAACGCTGTACTACATCGTAAAAGGTTCAGTTGCGGTACTGATCAAAG
ATGAAGAAGGTAAAGAGATGATTCTCTCTTACCTGAACCAAGGTGATTTTATCGGTGAGCTTGGCTTGTTTGAAGAAGGC
CAAGAGCGTACCGCTTGGGTTCGTGCTAAAACACCTTGTGAAGTGGCTGAAATCTCATTTAAGAAATTCCGTCAATTGAT
CCAAGTAAACCCAGATATCTTGATGCGCCTTTCAGGTCAAATGGCTCGTCGTCTGCAAGTGACCAGCCAAAAAGTTGGCG
ACCTTGCGTTCCTAGACGTAACTGGCCGTATCGCACAGACTCTGCTGAACCTTGCACGTCAGCCAGATGCGATGACTCAC
CCAGATGGTATGCAAATCAAGATCACTCGCCAAGAGATCGGTCAAATTGTTGGCTGTTCTCGTGAAACCGTTGGCCGCAT
CCTGAAGATGCTGGAAGAGCAGAACCTGATCTCTGCCCACGGTAAAACCATCGTGGTTTACGGCACTCGCTAA

Domains

Predicted by InterproScan.

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G8D3R0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

100

100

1
  crp Haemophilus influenzae Rd KW20

75.49

97.143

0.733
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467

Multiple sequence alignment