Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsS   Type   Regulator
Locus tag   ET951_RS16070 Genome accession   NZ_CP035683
Coordinates   242242..244302 (+) Length   686 a.a.
NCBI ID   WP_080551345.1    Uniprot ID   -
Organism   Vibrio mimicus strain 2011V-1073     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 237242..249302
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ET951_RS16060 - 237958..239097 (+) 1140 WP_154113965.1 exonuclease SbcCD subunit D -
  ET951_RS16065 - 239099..242140 (+) 3042 WP_154113966.1 AAA family ATPase -
  ET951_RS16070 cqsS 242242..244302 (+) 2061 WP_080551345.1 hybrid sensor histidine kinase/response regulator Regulator
  ET951_RS16075 cqsA 244385..245554 (-) 1170 WP_148555408.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  ET951_RS16080 - 245751..246713 (-) 963 WP_001104794.1 TDT family transporter -
  ET951_RS16085 clcA 246813..248219 (-) 1407 WP_154113967.1 H(+)/Cl(-) exchange transporter ClcA -

Sequence

Protein


Download         Length: 686 a.a.        Molecular weight: 78582.66 Da        Isoelectric Point: 5.4132

>NTDB_id=343622 ET951_RS16070 WP_080551345.1 242242..244302(+) (cqsS) [Vibrio mimicus strain 2011V-1073]
MTVSMEVIKKVYQYAEPNFSLVGWMGMLGYPAYYFIWEYWFPQTYENLGLRFVAALLFAGLAFRESLPNKWKRYMPYYFL
LTIGFCLPFFFCFMMLMNNWSTIWAMSFMASIFLHILLVHDTKVMALQAITSILMAYVAVYGFTDFQPNTLIEWPYVPVF
LFTYVFGNLCFFRNQISHETKVSIAKTFGAGIAHEMRNPLSALKTSIDVIRTMLPKPQAAAQSTYPLDAQELDLLHQILN
EADDVIYSGNNTIDLLLTSIDENRVSTASFKKYAAAEVIEKALKSFPYKNAADQHAIQLDVRQPFDFFGSDTLLTYALFN
LLKNAFYYQKEQFSVCIQIEQSAEHNLIKVRDNGVGIAPEMLEDIFRDFYTFGKNGSYGLGLPFCRKVMTAFGGTIRCFS
KHGEWTEFVLTFPRYESKIVREIKTDLLKSKSVIYIGSNQSIVRELNQLAAEEEFGFTALSAQQAVRRQDYEFEFDLILL
DLDDATQQGELLPKLEGTLSFAEGCIGYIYDPSKEYAVNINRYLHIQPISIHSVLKKTSKVIDRLLFEQDSLVMNRNIIP
LQKSRHERRILVVDDNQSIRTFTSILLEQQGYEVVQANDGCEVIAYMDTQTIDLVLMDIEMPKISGLEATHLIRSSDRDY
KNIPIIGYTGDNSPKTLALVQTSGMNDFIVKPADRDVLLNKVAAWV

Nucleotide


Download         Length: 2061 bp        

>NTDB_id=343622 ET951_RS16070 WP_080551345.1 242242..244302(+) (cqsS) [Vibrio mimicus strain 2011V-1073]
GTGACGGTGAGCATGGAAGTGATAAAAAAAGTTTACCAGTACGCGGAACCCAATTTTTCTTTGGTGGGGTGGATGGGGAT
GCTCGGCTATCCTGCCTATTACTTCATTTGGGAATACTGGTTTCCGCAAACCTATGAAAACTTAGGTTTGCGTTTTGTTG
CTGCATTGTTGTTCGCTGGGCTTGCTTTTCGGGAGTCATTGCCGAATAAGTGGAAGCGGTATATGCCGTACTACTTTTTG
CTCACCATAGGTTTTTGCTTACCTTTTTTCTTTTGTTTCATGATGTTGATGAACAACTGGTCGACCATTTGGGCGATGTC
GTTCATGGCATCCATCTTTTTACACATCCTCTTAGTGCACGATACTAAGGTGATGGCGCTGCAAGCCATTACCTCGATTT
TGATGGCTTATGTGGCGGTGTATGGCTTCACGGATTTCCAACCGAATACCCTGATTGAATGGCCGTATGTGCCTGTTTTC
TTGTTCACTTATGTCTTCGGCAATTTATGTTTCTTCCGTAACCAAATCTCCCATGAAACCAAAGTCTCCATTGCTAAAAC
ATTTGGCGCTGGGATCGCACATGAAATGCGTAACCCACTGAGTGCCTTGAAAACATCAATAGACGTTATTCGTACCATGC
TTCCTAAGCCTCAGGCAGCCGCGCAATCGACTTATCCATTGGATGCACAAGAACTGGATCTTCTACACCAGATTTTGAAT
GAGGCGGATGATGTTATCTATTCAGGCAATAACACCATTGATTTGTTGTTGACCTCAATCGATGAAAACCGTGTTTCCAC
CGCAAGCTTTAAAAAATACGCTGCGGCTGAAGTAATTGAGAAAGCACTTAAGAGCTTTCCTTATAAAAATGCCGCTGATC
AACACGCGATTCAGTTGGATGTTCGTCAGCCATTTGATTTTTTTGGTAGTGATACCTTGTTGACGTATGCCTTGTTCAAC
CTACTGAAGAATGCCTTTTACTATCAGAAAGAACAATTTTCCGTTTGTATTCAAATTGAGCAGAGTGCTGAACACAACCT
GATTAAAGTGCGTGATAACGGGGTAGGTATTGCTCCTGAAATGTTGGAAGACATATTTCGTGACTTTTATACCTTTGGCA
AAAATGGCAGTTACGGCCTAGGATTACCGTTTTGTCGTAAAGTGATGACTGCATTTGGCGGCACCATTCGCTGTTTTTCT
AAGCATGGTGAGTGGACGGAGTTCGTGCTGACTTTCCCACGTTACGAGTCAAAAATCGTTAGAGAAATTAAAACCGATTT
ATTAAAGTCCAAATCAGTTATTTACATAGGCTCGAATCAGTCGATTGTTCGAGAACTGAATCAGTTAGCGGCAGAGGAAG
AGTTTGGCTTTACCGCACTTTCAGCCCAGCAAGCGGTAAGACGGCAAGACTATGAATTTGAATTCGACCTAATCTTACTG
GACCTAGATGATGCCACTCAGCAAGGCGAACTTTTACCCAAACTCGAAGGAACGTTGAGTTTCGCGGAAGGCTGTATCGG
GTATATCTATGACCCTAGCAAAGAGTATGCGGTGAACATCAACCGTTACCTGCATATTCAACCGATCAGCATCCATTCCG
TGCTGAAGAAAACCAGCAAAGTCATTGATCGTCTGCTCTTTGAGCAAGACTCTCTGGTGATGAATCGCAACATCATTCCG
CTGCAAAAAAGTCGCCATGAACGGCGAATTCTCGTTGTTGATGACAACCAATCTATCCGTACTTTCACGTCGATACTGCT
TGAGCAGCAAGGATATGAGGTTGTGCAAGCGAATGATGGGTGCGAGGTGATCGCCTATATGGATACTCAGACTATCGACT
TAGTGTTGATGGACATTGAGATGCCTAAAATCAGTGGCTTAGAAGCGACACATCTCATCCGAAGCTCTGATCGTGATTAT
AAAAACATTCCTATTATTGGATACACAGGTGATAACAGCCCGAAAACCTTAGCGTTGGTGCAAACATCCGGCATGAATGA
TTTCATTGTTAAGCCTGCTGACCGTGATGTATTACTGAATAAAGTAGCAGCTTGGGTATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(570-682)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(312-414)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsS Vibrio cholerae strain A1552

84.84

100

0.848

Multiple sequence alignment