Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   ET951_RS10655 Genome accession   NZ_CP035682
Coordinates   2271870..2274113 (+) Length   747 a.a.
NCBI ID   WP_192927834.1    Uniprot ID   -
Organism   Vibrio mimicus strain 2011V-1073     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2266870..2279113
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ET951_RS10630 - 2267275..2267850 (-) 576 WP_000999599.1 hypothetical protein -
  ET951_RS10635 lolC 2268026..2269234 (+) 1209 WP_187377566.1 lipoprotein-releasing ABC transporter permease subunit LolC -
  ET951_RS10640 lolD 2269227..2269913 (+) 687 WP_154113435.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  ET951_RS10645 lolE 2269914..2271158 (+) 1245 WP_154113436.1 lipoprotein-releasing ABC transporter permease subunit LolE -
  ET951_RS10650 - 2271331..2271861 (-) 531 WP_005515139.1 DUF2062 domain-containing protein -
  ET951_RS10655 comEC 2271870..2274113 (+) 2244 WP_192927834.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ET951_RS10660 msbA 2274144..2275892 (+) 1749 WP_000052159.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  ET951_RS10665 lpxK 2275895..2276902 (+) 1008 WP_192927833.1 tetraacyldisaccharide 4'-kinase -
  ET951_RS10670 - 2276883..2277062 (+) 180 WP_000350065.1 Trm112 family protein -
  ET951_RS10675 kdsB 2277062..2277817 (+) 756 WP_154113439.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ET951_RS10680 - 2277881..2279113 (-) 1233 WP_154113440.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 747 a.a.        Molecular weight: 84333.44 Da        Isoelectric Point: 8.8542

>NTDB_id=343615 ET951_RS10655 WP_192927834.1 2271870..2274113(+) (comEC) [Vibrio mimicus strain 2011V-1073]
MTLLSNYWSLISFSITVLSAPYWPWMPTWGWAWFCLILTGLLGYHRTSRKFLGFALAILTIVLHGNLMRDQSNTLYQAGP
DIIIKGKVDSFFAKTRYAYEGLVLIHEVNGQTLNSLMRPRIRLVAPIPLQPNDQFEFSVTLKPVVGRLNETGFDLEAHYM
AHSLVARASVKPNTAYQIVQQSGLRSSLLFQLDVLTHTSPFQGLIRALTFGERSGIDEQEWQALRNSGLIHLVAISGLHI
GIAFSFGYLLGAGVMRLHAKLLWSPFVFGALLAVLYAWLAGFTIPTQRALIMCLLNVALVILGFPLSALKRILLTLCAVL
LWSPFASLSNSFWMSFLAVAIVLYQLASQGKRKAWWKALLLAQISLACLMAPVTAHFFGGLSITAVLYNLVFIPWFSVVI
VPALFLGLTLTVTIPTWAELYWPWVDWTFLPLDWALQFADVGWVVIPQSIQGLIAALVVLSLLYRVMSLRACALSLSIVG
LWWWFPSITPLWRMDVLDVGHGLAIVIEQNDRAIIYDTGSSWPGGSYAQNVIEPILQQRGIRRLDGLILSHLDNDHAGDW
QNLAKRWQPSWIRTSQVGVEFVPCIRGESWQWQSLHFDVLWPPQLVSRAYNQHSCVIRMTDAQSNHSVLLSGDVTAMGEW
LLARDGVPLQSDVMIVPHHGSKTSSTAEFITKVEPRLAIASLAKDNRWNLPNPQVVERYQNQQAQWLDTGQKGQISLFFY
QEQMDWFAQRGLGWEPWYRHMLRKGVE

Nucleotide


Download         Length: 2244 bp        

>NTDB_id=343615 ET951_RS10655 WP_192927834.1 2271870..2274113(+) (comEC) [Vibrio mimicus strain 2011V-1073]
ATGACTCTCTTGTCGAATTACTGGTCGCTAATTTCGTTTTCGATCACCGTGCTTTCTGCTCCTTATTGGCCGTGGATGCC
AACATGGGGCTGGGCTTGGTTTTGCCTTATTTTGACGGGTTTGCTCGGTTATCACCGTACAAGCCGAAAATTCCTTGGCT
TCGCGTTGGCCATACTAACTATCGTGCTACATGGCAACCTTATGCGAGATCAATCCAACACGCTCTATCAAGCAGGCCCG
GATATTATCATAAAAGGTAAGGTTGACAGCTTTTTTGCGAAAACTCGTTACGCTTATGAGGGTTTAGTCTTAATTCACGA
GGTGAATGGTCAAACCTTAAACAGCCTCATGAGGCCTCGTATTCGTCTAGTTGCACCTATTCCGTTGCAGCCCAATGATC
AATTCGAATTCTCTGTAACGCTTAAACCTGTTGTTGGTCGCCTAAATGAAACGGGCTTTGATTTGGAAGCCCATTACATG
GCTCACTCTTTGGTCGCGCGAGCCAGTGTTAAACCCAACACTGCTTATCAAATTGTGCAACAGAGTGGCTTAAGGTCAAG
TTTGTTATTTCAACTCGATGTTTTGACTCACACCAGCCCGTTTCAAGGGCTGATACGAGCGCTAACATTTGGGGAGAGAA
GTGGTATTGATGAGCAAGAGTGGCAGGCACTGCGTAACAGCGGCTTAATCCACTTAGTTGCGATTTCTGGTCTGCATATT
GGTATCGCGTTCAGTTTCGGCTATTTACTGGGAGCAGGCGTGATGCGCTTGCATGCCAAGCTGCTTTGGTCCCCTTTTGT
GTTTGGCGCTTTGCTTGCGGTGTTGTATGCATGGCTGGCAGGTTTCACCATACCGACTCAACGTGCGCTAATCATGTGCT
TACTCAATGTGGCATTGGTGATCTTGGGTTTTCCTCTTTCGGCATTAAAGCGGATTTTGCTTACCTTATGCGCCGTTTTA
CTTTGGTCGCCATTCGCGTCGCTCTCAAATAGCTTTTGGATGTCGTTTTTAGCTGTCGCGATTGTGCTTTATCAATTAGC
CAGTCAGGGTAAACGCAAAGCGTGGTGGAAAGCTCTGTTGCTAGCACAAATCTCCCTCGCCTGTTTAATGGCACCTGTTA
CAGCACACTTTTTCGGCGGGTTAAGTATTACGGCGGTTTTGTACAATTTGGTTTTTATACCGTGGTTCTCCGTGGTGATC
GTTCCCGCTTTGTTTTTGGGCTTGACACTCACAGTAACAATTCCCACTTGGGCTGAGCTTTATTGGCCTTGGGTGGATTG
GACTTTTCTGCCACTTGATTGGGCGCTGCAATTTGCGGATGTGGGTTGGGTAGTGATTCCACAAAGTATACAAGGCCTAA
TTGCTGCGTTAGTAGTGCTCAGTTTGCTGTATCGAGTGATGAGCCTACGAGCCTGTGCCTTATCGTTAAGCATCGTTGGT
TTATGGTGGTGGTTTCCTTCCATTACACCGCTTTGGCGTATGGATGTGTTGGATGTGGGGCATGGCTTAGCGATAGTGAT
TGAGCAAAATGACAGGGCTATTATCTATGATACGGGCAGCAGTTGGCCGGGAGGAAGTTACGCACAAAACGTCATTGAAC
CGATTTTGCAGCAGCGTGGAATTCGTCGATTGGATGGCTTGATTTTGAGCCATCTCGATAACGATCATGCGGGCGATTGG
CAAAATCTAGCCAAACGTTGGCAACCAAGTTGGATACGCACAAGCCAAGTTGGTGTGGAATTTGTTCCTTGTATACGTGG
TGAAAGTTGGCAATGGCAATCTTTGCATTTCGATGTGCTATGGCCGCCGCAGTTAGTCAGCCGAGCTTACAATCAGCATT
CGTGTGTGATCCGTATGACCGATGCTCAGTCTAACCATTCAGTGTTGCTTTCGGGTGATGTCACCGCAATGGGGGAGTGG
TTGCTCGCACGCGATGGAGTGCCACTGCAAAGTGATGTGATGATAGTGCCGCATCACGGCAGTAAAACCTCATCAACTGC
TGAGTTCATCACGAAAGTCGAACCACGACTGGCGATTGCGTCACTGGCCAAAGACAACCGCTGGAATTTGCCTAACCCGC
AAGTGGTGGAACGTTATCAAAACCAGCAAGCTCAGTGGCTAGATACGGGGCAAAAAGGGCAGATTAGCCTGTTTTTCTAT
CAAGAACAGATGGATTGGTTTGCCCAGCGCGGGCTTGGCTGGGAGCCTTGGTATAGGCATATGCTGCGTAAAGGAGTAGA
ATGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(499-677)

Competence protein (Competence)

(208-464)

Domain of unknown function (DUF4131) (DUF4131)

(24-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Vibrio cholerae strain A1552

82.463

100

0.825
  comEC Vibrio campbellii strain DS40M4

42.042

100

0.424
  comEC Vibrio parahaemolyticus RIMD 2210633

41.036

100

0.414

Multiple sequence alignment