Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   ET951_RS06935 Genome accession   NZ_CP035682
Coordinates   1486507..1487139 (-) Length   210 a.a.
NCBI ID   WP_000242749.1    Uniprot ID   A0A6G8D3R0
Organism   Vibrio mimicus strain 2011V-1073     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1481507..1492139
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ET951_RS06915 - 1481707..1482918 (+) 1212 WP_154113188.1 aspartate aminotransferase family protein -
  ET951_RS06920 astA 1483068..1484087 (+) 1020 WP_154113189.1 arginine N-succinyltransferase -
  ET951_RS06925 astD 1484097..1485554 (+) 1458 WP_154113190.1 succinylglutamate-semialdehyde dehydrogenase -
  ET951_RS06930 - 1485651..1486442 (+) 792 WP_022578511.1 DUF1338 domain-containing protein -
  ET951_RS06935 crp 1486507..1487139 (-) 633 WP_000242749.1 cAMP-activated global transcriptional regulator CRP Regulator
  ET951_RS06940 - 1487382..1488251 (-) 870 WP_001274669.1 phosphoribulokinase -
  ET951_RS06945 - 1488347..1488556 (-) 210 WP_000586576.1 YheU family protein -
  ET951_RS06950 - 1488666..1489655 (-) 990 WP_154113191.1 hydrolase -
  ET951_RS06955 - 1489652..1490137 (-) 486 WP_001278737.1 TIGR02444 family protein -
  ET951_RS06960 - 1490138..1492054 (-) 1917 WP_000627685.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23635.45 Da        Isoelectric Point: 8.2784

>NTDB_id=343605 ET951_RS06935 WP_000242749.1 1486507..1487139(-) (crp) [Vibrio mimicus strain 2011V-1073]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERTAWVRAKTPCEVAEISFKKFRQLIQVNPDILMRLSGQMARRLQVTSQKVGDLAFLDVTGRIAQTLLNLARQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=343605 ET951_RS06935 WP_000242749.1 1486507..1487139(-) (crp) [Vibrio mimicus strain 2011V-1073]
ATGGTTCTAGGTAAACCTCAAACCGATCCAACACTAGAGTGGTTTCTTTCACATTGTCACATTCATAAGTACCCATCAAA
AAGCACGCTGATCCATGCGGGTGAGAAAGCGGAAACGCTGTACTACATCGTTAAAGGTTCAGTTGCGGTACTGATTAAAG
ATGAAGAAGGTAAAGAGATGATCCTCTCTTACCTGAACCAAGGTGACTTCATCGGTGAACTCGGCTTGTTTGAAGAAGGC
CAAGAGCGTACCGCTTGGGTTCGTGCTAAAACACCGTGTGAAGTGGCTGAGATCTCATTTAAGAAATTCCGTCAGTTGAT
CCAAGTAAACCCTGACATCTTGATGCGCCTTTCAGGTCAAATGGCTCGTCGTCTGCAAGTGACCAGCCAGAAAGTTGGCG
ACCTTGCGTTCCTAGACGTAACTGGCCGTATCGCTCAAACTCTGCTGAACCTTGCGCGTCAGCCAGACGCGATGACTCAC
CCAGATGGCATGCAAATCAAGATCACTCGTCAAGAGATCGGTCAAATCGTTGGCTGTTCTCGTGAAACCGTTGGCCGCAT
CCTGAAGATGCTGGAAGAGCAGAACCTGATCTCTGCCCACGGTAAAACCATCGTGGTTTACGGTACTCGCTAA

Domains

Predicted by InterproScan.

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G8D3R0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

100

100

1
  crp Haemophilus influenzae Rd KW20

75.49

97.143

0.733
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467

Multiple sequence alignment