Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   EWA66_RS05245 Genome accession   NZ_CP035680
Coordinates   1129809..1130441 (-) Length   210 a.a.
NCBI ID   WP_011079297.1    Uniprot ID   -
Organism   Vibrio navarrensis strain 08-2462     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1124809..1135441
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EWA66_RS05225 - 1124959..1126170 (+) 1212 WP_039439262.1 aspartate aminotransferase family protein -
  EWA66_RS05230 astA 1126270..1127289 (+) 1020 WP_039431185.1 arginine N-succinyltransferase -
  EWA66_RS05235 astD 1127307..1128764 (+) 1458 WP_039439264.1 succinylglutamate-semialdehyde dehydrogenase -
  EWA66_RS05240 - 1128945..1129736 (+) 792 WP_039439267.1 DUF1338 domain-containing protein -
  EWA66_RS05245 crp 1129809..1130441 (-) 633 WP_011079297.1 cAMP-activated global transcriptional regulator CRP Regulator
  EWA66_RS05250 - 1130684..1131553 (-) 870 WP_039436832.1 phosphoribulokinase -
  EWA66_RS05255 - 1131684..1131896 (-) 213 WP_039431176.1 YheU family protein -
  EWA66_RS05260 - 1131940..1132917 (-) 978 WP_039439270.1 hydrolase -
  EWA66_RS05265 - 1133089..1133571 (-) 483 WP_039439272.1 TIGR02444 family protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23538.33 Da        Isoelectric Point: 7.8387

>NTDB_id=343548 EWA66_RS05245 WP_011079297.1 1129809..1130441(-) (crp) [Vibrio navarrensis strain 08-2462]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSAQMASRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=343548 EWA66_RS05245 WP_011079297.1 1129809..1130441(-) (crp) [Vibrio navarrensis strain 08-2462]
ATGGTTCTAGGTAAACCTCAAACCGACCCAACACTAGAGTGGTTTCTTTCACACTGTCATATTCATAAGTACCCTTCAAA
AAGCACGCTGATCCACGCGGGCGAAAAAGCAGAAACTTTGTACTACATCGTAAAAGGTTCTGTTGCCGTGCTTATCAAAG
ACGAAGAAGGTAAAGAAATGATTCTTTCTTACCTGAACCAAGGTGACTTTATCGGTGAGCTAGGCTTGTTTGAAGAAGGC
CAAGAGCGTACTGCTTGGGTTCGTGCAAAATCTCCTTGTGAAGTGGCTGAAATTTCATTCAAGAAATTCCGTCAGTTAAT
CCAAGTCAACCCAGACATTCTCATGCGCTTGTCAGCGCAGATGGCAAGTCGCCTACAAGTGACCAGCCAGAAAGTGGGCG
ACTTGGCATTCTTGGACGTGACTGGTCGTATCGCTCAGACACTGCTGAATCTAGCAAAACAGCCTGATGCGATGACGCAC
CCAGACGGCATGCAGATCAAGATCACTCGTCAAGAGATTGGTCAGATTGTTGGTTGTTCACGTGAAACCGTTGGCCGCAT
TCTGAAAATGCTGGAAGAGCAGAACCTGATCTCTGCGCACGGCAAAACCATTGTTGTTTACGGGACTCGTTAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

98.095

100

0.981
  crp Haemophilus influenzae Rd KW20

75.49

97.143

0.733
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467

Multiple sequence alignment