Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK/comK1   Type   Regulator
Locus tag   EU512_RS09630 Genome accession   NZ_CP035541
Coordinates   1926899..1927483 (+) Length   194 a.a.
NCBI ID   WP_053015935.1    Uniprot ID   -
Organism   Staphylococcus haemolyticus strain PK-01     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1921899..1932483
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EU512_RS09605 (EU512_09610) - 1922655..1924022 (-) 1368 WP_016931373.1 isochorismate synthase -
  EU512_RS09610 (EU512_09615) - 1924202..1925140 (+) 939 WP_016931372.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  EU512_RS09615 (EU512_09620) - 1925239..1925793 (-) 555 WP_016931371.1 GNAT family N-acetyltransferase -
  EU512_RS09620 (EU512_09625) - 1925980..1926210 (+) 231 WP_011276193.1 NINE protein -
  EU512_RS13780 - 1926289..1926390 (+) 102 WP_011276194.1 SAR1012 family small protein -
  EU512_RS09625 (EU512_09630) - 1926467..1926685 (-) 219 WP_011276195.1 IDEAL domain-containing protein -
  EU512_RS09630 (EU512_09635) comK/comK1 1926899..1927483 (+) 585 WP_053015935.1 competence protein ComK Regulator
  EU512_RS13890 - 1928396..1928518 (+) 123 WP_255201521.1 hypothetical protein -
  EU512_RS13895 - 1928531..1928725 (+) 195 Protein_1892 PH domain-containing protein -
  EU512_RS13900 - 1928819..1928905 (+) 87 WP_256096978.1 SHOCT domain-containing protein -
  EU512_RS09650 (EU512_09655) - 1928940..1929515 (+) 576 WP_046464885.1 hypothetical protein -
  EU512_RS09655 (EU512_09660) - 1929603..1929686 (+) 84 WP_227528431.1 Ltp family lipoprotein -
  EU512_RS09660 (EU512_09665) - 1929734..1930723 (-) 990 WP_138109683.1 lipoate--protein ligase -
  EU512_RS09665 (EU512_09670) - 1930924..1931100 (+) 177 WP_011276202.1 DUF2187 family protein -
  EU512_RS09670 (EU512_09675) - 1931117..1931719 (+) 603 WP_011276203.1 CPBP family glutamic-type intramembrane protease -
  EU512_RS09675 (EU512_09680) - 1932014..1932263 (+) 250 Protein_1899 IS5/IS1182 family transposase -

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 22972.40 Da        Isoelectric Point: 9.2942

>NTDB_id=343092 EU512_RS09630 WP_053015935.1 1926899..1927483(+) (comK/comK1) [Staphylococcus haemolyticus strain PK-01]
MTNISQSQNTVYIIRKGDMIIKPVIDDYEQTKGSEIWKYDSTIVSSPFKTQKIVERSCKFYGNSYISKKSETQRIAGITS
KPPILLTPLFPTYFFPTHSDRLEENMWINMHYVHEIKPLKNRKCKIIFANHQTLTLNVSYHSIWHQYSNCIFYYYMVDKQ
SRMKSNNPEMPIDYEKATLNIFEALSHYSLLQDK

Nucleotide


Download         Length: 585 bp        

>NTDB_id=343092 EU512_RS09630 WP_053015935.1 1926899..1927483(+) (comK/comK1) [Staphylococcus haemolyticus strain PK-01]
ATGACAAATATTTCTCAAAGCCAAAATACTGTATATATTATTCGAAAAGGAGATATGATAATCAAACCCGTCATTGATGA
TTATGAGCAAACAAAAGGATCAGAAATATGGAAATATGATTCCACAATAGTTTCAAGCCCATTCAAAACTCAAAAAATCG
TCGAACGCTCATGTAAATTTTATGGTAATAGCTATATTAGTAAGAAATCCGAAACACAACGAATTGCCGGCATTACTAGT
AAACCACCTATTTTATTGACTCCTCTCTTCCCCACTTATTTTTTCCCTACACATTCAGACCGTTTAGAAGAAAACATGTG
GATTAATATGCATTATGTACATGAAATTAAACCTCTTAAAAATCGAAAATGTAAAATTATTTTTGCAAATCATCAAACAT
TAACACTTAATGTTTCCTACCACAGTATTTGGCACCAATACTCTAACTGCATTTTTTATTATTACATGGTCGATAAACAA
TCTCGTATGAAGTCAAACAATCCAGAAATGCCAATAGATTATGAGAAAGCGACTTTAAATATTTTCGAAGCACTTTCACA
TTATTCACTATTACAAGATAAATAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(11-161)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK/comK1 Staphylococcus aureus MW2

69.149

96.907

0.67
  comK/comK1 Staphylococcus aureus N315

69.149

96.907

0.67

Multiple sequence alignment