Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   EU243_RS11940 Genome accession   NZ_CP035533
Coordinates   2324893..2325228 (-) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus velezensis strain DTU001     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2319893..2330228
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EU243_RS11890 (EU243_12080) comGC 2320127..2320393 (+) 267 WP_042635730.1 competence type IV pilus major pilin ComGC Machinery gene
  EU243_RS11895 (EU243_12085) comGD 2320383..2320820 (+) 438 WP_044053464.1 competence type IV pilus minor pilin ComGD Machinery gene
  EU243_RS11900 (EU243_12090) comGE 2320804..2321118 (+) 315 WP_015388003.1 competence type IV pilus minor pilin ComGE Machinery gene
  EU243_RS11905 (EU243_12095) comGF 2321132..2321527 (+) 396 WP_046559876.1 competence type IV pilus minor pilin ComGF -
  EU243_RS11910 (EU243_12100) comGG 2321528..2321905 (+) 378 WP_014305410.1 competence type IV pilus minor pilin ComGG Machinery gene
  EU243_RS11915 (EU243_12105) - 2321962..2322141 (+) 180 WP_003153093.1 YqzE family protein -
  EU243_RS11920 (EU243_12110) - 2322181..2322510 (-) 330 WP_003153097.1 DUF3889 domain-containing protein -
  EU243_RS11925 (EU243_12115) tapA 2322769..2323440 (+) 672 WP_046559874.1 amyloid fiber anchoring/assembly protein TapA -
  EU243_RS11930 (EU243_12120) sipW 2323412..2323996 (+) 585 WP_046559873.1 signal peptidase I SipW -
  EU243_RS11935 (EU243_12125) tasA 2324060..2324845 (+) 786 WP_003153102.1 biofilm matrix protein TasA -
  EU243_RS11940 (EU243_12130) sinR 2324893..2325228 (-) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  EU243_RS11945 (EU243_12135) sinI 2325262..2325435 (-) 174 WP_003153105.1 anti-repressor SinI Regulator
  EU243_RS11950 (EU243_12140) - 2325612..2326406 (-) 795 WP_014305407.1 YqhG family protein -
  EU243_RS11955 (EU243_12145) - 2326424..2328094 (-) 1671 WP_046559872.1 DEAD/DEAH box helicase -
  EU243_RS11960 (EU243_12150) gcvT 2328517..2329617 (+) 1101 WP_014305405.1 glycine cleavage system aminomethyltransferase GcvT -

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=343008 EU243_RS11940 WP_003153104.1 2324893..2325228(-) (sinR) [Bacillus velezensis strain DTU001]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=343008 EU243_RS11940 WP_003153104.1 2324893..2325228(-) (sinR) [Bacillus velezensis strain DTU001]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCGATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991

Multiple sequence alignment