Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG/mmsA   Type   Machinery gene
Locus tag   FSA40_RS08565 Genome accession   NZ_CP044493
Coordinates   1691228..1693243 (-) Length   671 a.a.
NCBI ID   WP_151416421.1    Uniprot ID   -
Organism   Streptococcus mutans strain MD     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1686228..1698243
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FSA40_RS08540 (FSA40_1713) - 1687116..1687652 (+) 537 WP_002263470.1 biotin transporter BioY -
  FSA40_RS08545 (FSA40_1714) - 1687750..1688199 (+) 450 WP_002263469.1 universal stress protein -
  FSA40_RS08550 (FSA40_1715) - 1688477..1689862 (-) 1386 WP_301337314.1 Cof-type HAD-IIB family hydrolase -
  FSA40_RS08555 (FSA40_1716) - 1689935..1690894 (+) 960 WP_151416420.1 asparaginase -
  FSA40_RS08560 (FSA40_1717) - 1690921..1691085 (+) 165 WP_002263466.1 hypothetical protein -
  FSA40_RS08565 (FSA40_1718) recG/mmsA 1691228..1693243 (-) 2016 WP_151416421.1 ATP-dependent DNA helicase RecG Machinery gene
  FSA40_RS08570 (FSA40_1719) alr 1693416..1694531 (-) 1116 WP_151416422.1 alanine racemase -
  FSA40_RS08575 (FSA40_1720) acpS 1694528..1694887 (-) 360 WP_002263463.1 holo-ACP synthase -
  FSA40_RS08580 (FSA40_1721) - 1695157..1696191 (-) 1035 WP_002311767.1 3-deoxy-7-phosphoheptulonate synthase -
  FSA40_RS08585 (FSA40_1722) - 1696193..1697224 (-) 1032 WP_002311768.1 3-deoxy-7-phosphoheptulonate synthase -

Sequence

Protein


Download         Length: 671 a.a.        Molecular weight: 75340.27 Da        Isoelectric Point: 7.6470

>NTDB_id=342934 FSA40_RS08565 WP_151416421.1 1691228..1693243(-) (recG/mmsA) [Streptococcus mutans strain MD]
MDLQSSLAVLKGLGPKSVEKFHRLGIYTIEDLLLYYPFRYEDLKAKSVLDLLDGEKAVVTGKVVTPANVQYYGFKRNRLS
FKIKQDEAVIAVSFFNQPYLQDKVELDQDIAIFGKWDQKKSALTGMKILAQVTDDMQPVYHVAQGISQSALIKAIQSVFD
AGYLRFLSENLPQILLDKYRLLDRQTATRAMHFPKDLEEYKQALRRIKFEELFYFQLNLQVLKANNKSESNGLLITYDHD
QVAAKIAALPFALTNAQKRSLDEILADMKSGAHMNRLLQGDVGSGKTVIASLAMYAAYSAGLQSALMVPTEILAEQHYES
LRTLFPELSIALLTSGMKAAVRRSALAAIADGSVDMIVGTHALIQEGVDYHKLGLVITDEQHRFGVKQRRLFREKGENPD
VLMMTATPIPRTLAITAFGEMDVSLIDELPAGRKPIVTRWVKHEQLDKVLPWVKEQLKKKEQVYVISPLIEESETLDLKN
AVALEEDLKAYFASSANIALMHGRMKNDEKEAIMQAFKKGSIDILVSTTVIEVGVNVPNATIMIIMDADRFGLSQLHQLR
GRVGRGEKQSYAILVANPKTDTGKNRMRIMTKTTDGFVLAEEDLKMRGSGEIFGVRQSGIPEFQVADIVEDYPILEEARK
VASQIVAVKDWCQDKRWAILVQNLKQKEILD

Nucleotide


Download         Length: 2016 bp        

>NTDB_id=342934 FSA40_RS08565 WP_151416421.1 1691228..1693243(-) (recG/mmsA) [Streptococcus mutans strain MD]
ATGGACTTACAGTCATCACTTGCGGTTTTAAAGGGATTAGGTCCTAAGTCTGTAGAAAAATTTCATAGATTAGGCATTTA
TACCATTGAGGACTTGTTGCTTTACTATCCTTTTCGTTATGAGGACCTTAAGGCAAAATCTGTTTTAGATTTGTTAGATG
GTGAAAAAGCTGTTGTTACTGGAAAAGTAGTGACACCAGCTAATGTACAATATTATGGGTTTAAACGCAATCGTCTATCT
TTTAAAATAAAACAAGATGAAGCTGTTATTGCTGTTTCTTTTTTTAATCAGCCTTATTTACAAGATAAGGTGGAGCTTGA
TCAGGATATTGCTATTTTTGGAAAATGGGATCAAAAGAAGTCAGCTCTTACGGGCATGAAGATTTTGGCTCAAGTGACAG
ATGATATGCAGCCTGTTTATCATGTGGCACAAGGAATATCACAGTCAGCTCTGATTAAGGCTATTCAATCTGTTTTTGAT
GCTGGCTATTTACGCTTTTTATCTGAAAATTTACCGCAGATTCTGCTTGATAAATATCGTTTGTTAGACAGACAAACAGC
TACGCGGGCTATGCATTTTCCGAAAGATTTGGAAGAATATAAACAAGCCTTGCGCCGCATCAAATTTGAGGAACTCTTTT
ATTTTCAACTCAATTTGCAGGTTCTTAAAGCAAATAATAAATCAGAATCAAATGGTCTGCTTATTACTTATGATCACGAT
CAAGTGGCTGCTAAAATAGCTGCTCTGCCTTTTGCCTTGACGAATGCCCAAAAAAGGAGCTTAGACGAAATTCTGGCAGA
TATGAAGTCTGGCGCTCATATGAATCGGCTTTTACAGGGAGATGTCGGTTCTGGTAAGACAGTCATTGCCAGTCTTGCTA
TGTATGCAGCCTATAGTGCAGGTCTGCAGTCTGCTTTGATGGTTCCTACGGAAATTTTAGCGGAACAACATTATGAAAGT
TTAAGGACTTTATTTCCTGAACTTTCAATTGCACTTTTGACGTCTGGAATGAAGGCTGCTGTAAGACGTTCAGCCTTAGC
AGCTATCGCTGATGGCTCAGTAGATATGATTGTTGGTACCCACGCTCTCATTCAAGAAGGTGTTGATTACCATAAATTAG
GCTTAGTTATTACGGATGAACAACATCGATTTGGTGTTAAGCAAAGGCGACTGTTTAGGGAAAAGGGAGAGAATCCTGAT
GTTCTCATGATGACAGCCACACCTATTCCTAGAACCTTGGCTATTACTGCCTTTGGCGAAATGGATGTTTCTCTTATTGA
TGAATTGCCAGCAGGTCGCAAACCGATTGTTACACGTTGGGTTAAGCATGAACAGTTAGATAAAGTTCTGCCTTGGGTTA
AAGAACAGCTCAAGAAAAAAGAACAAGTCTATGTCATTTCACCTTTGATTGAGGAGTCTGAAACCTTGGATTTGAAAAAT
GCTGTCGCTTTAGAAGAAGACTTAAAAGCTTATTTTGCGTCGTCTGCTAATATTGCTCTTATGCATGGTCGTATGAAAAA
TGATGAAAAAGAAGCCATTATGCAGGCTTTCAAAAAGGGCAGTATTGATATTCTGGTTTCAACAACTGTCATTGAAGTTG
GGGTCAATGTACCTAATGCTACGATTATGATTATTATGGATGCCGATCGTTTTGGTCTTAGTCAATTGCATCAATTACGA
GGACGTGTAGGACGTGGAGAAAAGCAATCTTATGCCATTTTAGTTGCTAATCCTAAAACGGATACTGGGAAAAATCGCAT
GCGCATTATGACAAAAACAACAGATGGCTTTGTTTTGGCTGAAGAAGATTTAAAAATGCGTGGTTCAGGAGAAATTTTTG
GTGTTCGTCAATCTGGCATTCCTGAATTTCAGGTGGCTGATATTGTGGAAGATTACCCTATTTTAGAAGAGGCTAGAAAA
GTGGCTAGTCAAATTGTGGCCGTTAAAGATTGGTGTCAAGATAAACGATGGGCAATTCTTGTGCAAAATCTTAAGCAAAA
AGAAATTTTGGATTAA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(450-566)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(593-666)

DEAD/DEAH box helicase (DEAD)

(254-409)

RecG wedge domain (RecG_wedge)

(10-156)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG/mmsA Streptococcus pneumoniae R6

69.598

100

0.696
  recG/mmsA Streptococcus pneumoniae R36A

69.598

100

0.696
  recG Bacillus subtilis subsp. subtilis str. 168

49.48

100

0.496
  recG Neisseria meningitidis strain C311

39.51

97.317

0.385