Detailed information NTG0342887

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: EUB48_RS04090
• Genome accession: NZ_CP035503
• Coordinates: 846586..847428 (-)
• Length: 280 a.a.
• NCBI ID: WP_142817736.1
• Uniprot ID: A0A515D839
• Organism: Rhodoferax sediminis strain CHu59-6-5
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 841586..852428

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EUB48_RS04060 (EUB48_04060)	argJ	842261..843490 (+)	1230	WP_142817731.1	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	-
EUB48_RS04065 (EUB48_04065)	-	843487..844440 (+)	954	WP_142817732.1	ATP-binding protein	-
EUB48_RS04070 (EUB48_04070)	-	844437..844925 (+)	489	WP_142817733.1	NUDIX domain-containing protein	-
EUB48_RS04075 (EUB48_04075)	-	844947..845159 (-)	213	WP_142817734.1	DNA gyrase inhibitor YacG	-
EUB48_RS04080 (EUB48_04080)	zapD	845194..845949 (-)	756	WP_142821081.1	cell division protein ZapD	-
EUB48_RS04085 (EUB48_04085)	coaE	845973..846581 (-)	609	WP_142817735.1	dephospho-CoA kinase	-
EUB48_RS04090 (EUB48_04090)	pilD	846586..847428 (-)	843	WP_142817736.1	prepilin peptidase	Machinery gene
EUB48_RS04095 (EUB48_04095)	pilC	847428..848645 (-)	1218	WP_142817737.1	type II secretion system F family protein	Machinery gene
EUB48_RS04100 (EUB48_04100)	pilB	848668..850404 (-)	1737	WP_142817738.1	type IV-A pilus assembly ATPase PilB	Machinery gene
EUB48_RS04105 (EUB48_04105)	-	850524..851048 (-)	525	WP_142817739.1	low molecular weight protein-tyrosine-phosphatase	-
EUB48_RS04110 (EUB48_04110)	-	851142..851888 (+)	747	WP_142821082.1	ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 280 a.a.
• Molecular weight: 30482.05 Da
• Isoelectric Point: 6.2115

>NTDB_id=342887 EUB48_RS04090 WP_142817736.1 846586..847428(-) (pilD) [Rhodoferax sediminis strain CHu59-6-5]
MLVSQWFDAALGGVIGLLLGSFLNVVIYRLPKMLEAQWAAECAEISGKEAVEGQPFNLMVPRSRCQQCGHQIRWYENIPV
LSYLFLRGKCSNCTVPISLRYPLVELATGALFYWCIWHWGATLTGLVWCGFSGAIVALAFIDWDTTLLPDDITLPLLWAG
LLAAALQWTDVPLVSAIWGAAAGYLSLWLIYWIFKLITGKEGMGYGDFKLFAALGAWFGWQALVPIILMASVIGAVVGIA
LKFSSGLREGGYVPFGPFLAGAGLTAMVFGPQSILHVVGL

Nucleotide

• Length: 843 bp

>NTDB_id=342887 EUB48_RS04090 WP_142817736.1 846586..847428(-) (pilD) [Rhodoferax sediminis strain CHu59-6-5]
ATGCTGGTCTCGCAATGGTTTGACGCCGCACTTGGCGGCGTGATCGGCTTGCTGCTGGGCAGTTTTCTCAACGTGGTGAT
CTATCGCCTGCCCAAGATGCTGGAGGCGCAATGGGCGGCCGAATGCGCGGAGATCTCGGGCAAGGAGGCGGTCGAGGGGC
AACCCTTCAACCTGATGGTGCCGCGCTCGCGCTGCCAGCAGTGCGGCCACCAGATCCGTTGGTACGAGAACATCCCTGTC
CTGAGTTATCTTTTTTTGCGTGGCAAATGCTCGAACTGCACCGTGCCCATCAGCCTGCGTTATCCGCTGGTGGAACTGGC
CACCGGAGCGCTGTTTTACTGGTGCATCTGGCACTGGGGCGCCACACTGACGGGCCTCGTCTGGTGTGGCTTCTCGGGCG
CCATCGTCGCGCTGGCGTTTATCGACTGGGATACCACGCTGCTGCCCGACGACATCACGCTGCCACTCTTGTGGGCTGGG
CTGCTCGCCGCGGCGCTGCAGTGGACCGACGTGCCGCTGGTGAGCGCGATCTGGGGCGCCGCGGCGGGCTATCTTTCGCT
GTGGCTGATTTACTGGATTTTCAAACTGATCACCGGCAAGGAAGGCATGGGTTACGGCGACTTCAAGCTGTTCGCGGCGC
TCGGGGCCTGGTTTGGCTGGCAGGCGCTGGTGCCCATCATCCTGATGGCGTCGGTGATTGGCGCCGTCGTCGGCATCGCC
CTGAAGTTTTCGAGCGGGCTGCGCGAAGGCGGCTATGTGCCGTTCGGCCCTTTCCTGGCAGGCGCCGGCCTGACCGCCAT
GGTTTTTGGGCCGCAATCGATCCTTCACGTCGTGGGGTTGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (14-119)

• Type IV leader peptidase family (Peptidase_A24) (135-239)

3D structure

• AlphaFold DB: A0A515D839

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	50.741	96.429	0.489
pilD	Vibrio cholerae strain A1552	50	97.143	0.486
pilD	Neisseria gonorrhoeae MS11	48.855	93.571	0.457
pilD	Acinetobacter baumannii D1279779	46.768	93.929	0.439
pilD	Acinetobacter nosocomialis M2	46.008	93.929	0.432