Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   FSA40_RS02355 Genome accession   NZ_CP044493
Coordinates   441293..441934 (+) Length   213 a.a.
NCBI ID   WP_002263036.1    Uniprot ID   -
Organism   Streptococcus mutans strain MD     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 436293..446934
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FSA40_RS02335 (FSA40_0458) - 436570..437313 (+) 744 WP_002263040.1 Stp1/IreP family PP2C-type Ser/Thr phosphatase -
  FSA40_RS02340 (FSA40_0459) pknB 437310..439160 (+) 1851 WP_002263039.1 Stk1 family PASTA domain-containing Ser/Thr kinase Regulator
  FSA40_RS02345 (FSA40_0461) liaF 439604..440299 (+) 696 WP_002263038.1 cell wall-active antibiotics response protein LiaF -
  FSA40_RS02350 (FSA40_0462) - 440296..441300 (+) 1005 WP_002263037.1 sensor histidine kinase -
  FSA40_RS02355 (FSA40_0463) vraR 441293..441934 (+) 642 WP_002263036.1 response regulator transcription factor Regulator
  FSA40_RS02360 (FSA40_0464) - 441978..443393 (+) 1416 WP_151416193.1 Cof-type HAD-IIB family hydrolase -
  FSA40_RS02365 (FSA40_0465) - 443377..443763 (+) 387 WP_002268943.1 S1 RNA-binding domain-containing protein -
  FSA40_RS02370 (FSA40_0466) - 443842..444618 (-) 777 WP_002281212.1 glycyl-radical enzyme activating protein -
  FSA40_RS02375 (FSA40_0467) - 444749..445495 (+) 747 WP_151416194.1 DeoR/GlpR family DNA-binding transcription regulator -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23824.40 Da        Isoelectric Point: 4.8864

>NTDB_id=342880 FSA40_RS02355 WP_002263036.1 441293..441934(+) (vraR) [Streptococcus mutans strain MD]
MSKTKVILVDDHEMVRLGLKSFLNLQDNVEVIGEASNGRQGIDLALKLKPDVVVMDLVMPEMDGVEATLELLKDWKEAKI
LVLTSYLDNEKIYPVIEAGAKGYMLKTSSAAEILNAIQKVAKGDLAIETEVDKKIKDHHNNPDLHEDLTARERDILALLA
KGYDNQTIADELFISLKTVKTHVSNILSKLQVDDRTQAVVYAFQHHLVPQDEN

Nucleotide


Download         Length: 642 bp        

>NTDB_id=342880 FSA40_RS02355 WP_002263036.1 441293..441934(+) (vraR) [Streptococcus mutans strain MD]
ATGAGTAAAACAAAAGTTATACTGGTTGATGATCATGAAATGGTTCGATTGGGTTTGAAAAGTTTTCTTAATTTACAAGA
TAATGTAGAAGTTATCGGTGAGGCTAGCAATGGCCGTCAAGGTATTGACTTGGCTTTAAAATTAAAACCAGACGTTGTTG
TCATGGACTTGGTTATGCCAGAAATGGATGGTGTAGAAGCCACTCTTGAACTTCTAAAAGATTGGAAAGAAGCCAAAATT
CTAGTTTTAACCAGTTATTTAGATAACGAAAAAATTTATCCTGTCATTGAAGCAGGTGCTAAAGGTTATATGTTGAAAAC
TTCCAGCGCAGCTGAAATTTTGAATGCCATTCAAAAAGTAGCTAAGGGAGATTTAGCGATTGAAACAGAAGTTGATAAGA
AAATCAAGGATCATCATAATAATCCTGATTTGCATGAAGATTTAACAGCGCGTGAACGAGACATTTTGGCTTTACTTGCT
AAGGGTTATGATAACCAAACGATTGCTGATGAGCTTTTCATTTCTTTGAAGACTGTCAAAACACATGTTTCTAATATCTT
ATCGAAATTACAAGTTGATGATCGGACCCAAGCCGTTGTCTATGCTTTTCAGCATCATTTAGTGCCACAGGACGAAAATT
AG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(148-202)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

51.22

96.244

0.493
  degU Bacillus subtilis subsp. subtilis str. 168

35.398

100

0.376

Multiple sequence alignment