Detailed information    

insolico Bioinformatically predicted

Overview

Name   stkP   Type   Regulator
Locus tag   F7V86_RS15325 Genome accession   NZ_CP044444
Coordinates   2980428..2982371 (+) Length   647 a.a.
NCBI ID   WP_021493698.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain KC41     
Function   require for competence development; phosphorylate ComE (predicted from homology)   
Competence regulation

Genomic Context

Location: 2975428..2987371
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F7V86_RS15300 def 2975802..2976284 (+) 483 WP_014417743.1 peptide deformylase -
  F7V86_RS15305 fmt 2976289..2977242 (+) 954 WP_106067968.1 methionyl-tRNA formyltransferase -
  F7V86_RS15310 rsmB 2977229..2978572 (+) 1344 WP_003154341.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  F7V86_RS15315 rlmN 2978576..2979667 (+) 1092 WP_014417746.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  F7V86_RS15320 - 2979673..2980434 (+) 762 WP_017417762.1 Stp1/IreP family PP2C-type Ser/Thr phosphatase -
  F7V86_RS15325 stkP 2980428..2982371 (+) 1944 WP_021493698.1 Stk1 family PASTA domain-containing Ser/Thr kinase Regulator
  F7V86_RS15330 rsgA 2982386..2983276 (+) 891 WP_065180265.1 ribosome small subunit-dependent GTPase A -
  F7V86_RS15335 rpe 2983278..2983928 (+) 651 WP_014417749.1 ribulose-phosphate 3-epimerase -
  F7V86_RS15340 - 2983997..2984641 (+) 645 WP_014417750.1 thiamine diphosphokinase -
  F7V86_RS15345 spoVM 2984727..2984807 (+) 81 WP_003154329.1 stage V sporulation protein SpoVM -
  F7V86_RS15350 rpmB 2984885..2985073 (-) 189 WP_003154328.1 50S ribosomal protein L28 -
  F7V86_RS15355 - 2985332..2985694 (+) 363 WP_003154327.1 Asp23/Gls24 family envelope stress response protein -

Sequence

Protein


Download         Length: 647 a.a.        Molecular weight: 71655.24 Da        Isoelectric Point: 5.0679

>NTDB_id=342702 F7V86_RS15325 WP_021493698.1 2980428..2982371(+) (stkP) [Bacillus amyloliquefaciens strain KC41]
MLTGKRISGRYHILRPIGGGGMANVFLAEDIILEREVAIKILRFDFVNDIDFIRRFRREAQSASSLDHPNIVSIYDIGEE
GDIYYIVMEYVEGMTLKEYITAHGPLHPKEALSVMEQIVSAIAHAHQNHIVHRDIKPHNILIDHLGHIKVTDFGIATALT
STTITHTNSVLGSVHYLSPEQARGGLATKKSDIYALGIVLFELLTGKIPFDGESAVSIALKHLQTETPSARKWNPSIPQS
VENIILKATAKDPFHRYESAEDMEADIRTAFDAGRLNEQKFSVQDDEEMTKAIPVITDGAKAAPQAETPGETDDKEQQPA
KKKKRKWPWVLLSVCFIFIMAAVLAVTVFPSLFMPKDVSVPDVRGMKYEKAEALLEKNGLRADPDITDIEDDKIEEELMV
KTDPKAGSTVKEGSSVKLYKSIGKPKTQLIDVKGRQIGDAKKALKDKGFKHVNVKEENDDSEAGTVIDQDPSAGTDMVGS
DDEVNLTVSLGPADVTLRDLKTYSKEAASGYLEDNGLQLVEKQAHSDDVPKGQVMKQEPAAGTAVKPGSNVEVTFSLGPE
EKPAKTVKEKISIPYEPEHEGDELEVQIAIDDKDHSISDTYDSFKIKEPTEKTIELKIDQGQKGYYQVMVDHKVVSYKTI
EYPKDND

Nucleotide


Download         Length: 1944 bp        

>NTDB_id=342702 F7V86_RS15325 WP_021493698.1 2980428..2982371(+) (stkP) [Bacillus amyloliquefaciens strain KC41]
GTGCTAACCGGCAAGCGGATCAGCGGGCGTTATCATATCCTCCGGCCCATTGGCGGCGGCGGAATGGCAAACGTTTTTTT
AGCTGAGGACATCATTCTCGAACGTGAAGTCGCAATTAAAATTCTGCGGTTTGACTTTGTGAATGACATTGATTTTATCA
GGCGTTTCAGAAGAGAAGCACAGTCGGCATCAAGCCTCGATCATCCGAATATCGTCAGTATTTACGATATCGGGGAGGAA
GGCGATATTTATTACATTGTCATGGAATATGTGGAAGGCATGACATTAAAGGAATACATAACCGCACACGGGCCGCTTCA
TCCGAAAGAAGCGCTGTCCGTTATGGAGCAGATCGTCTCGGCCATCGCCCATGCCCATCAAAACCATATCGTGCACCGGG
ATATTAAACCGCACAATATATTGATAGATCATTTAGGGCATATCAAGGTGACGGATTTCGGCATCGCCACAGCGCTTACG
TCTACGACAATCACACATACGAATTCTGTGCTGGGCTCGGTTCATTATTTGTCTCCGGAGCAGGCGAGAGGCGGTCTTGC
AACGAAAAAATCAGATATTTACGCGCTCGGCATCGTGCTGTTTGAGCTTTTAACAGGTAAAATCCCTTTTGACGGAGAAT
CAGCAGTCAGCATAGCGCTTAAGCATCTGCAAACAGAAACGCCTTCCGCCAGAAAGTGGAACCCTTCCATTCCGCAGAGC
GTCGAAAACATTATTTTAAAGGCAACCGCTAAAGACCCGTTTCACCGCTATGAAAGCGCCGAGGACATGGAAGCGGACAT
CAGAACGGCTTTTGACGCCGGCAGGCTGAATGAACAAAAATTTTCCGTTCAGGATGATGAGGAAATGACAAAAGCCATTC
CCGTTATTACTGACGGCGCAAAAGCCGCGCCTCAGGCGGAAACGCCGGGGGAGACGGACGATAAGGAACAGCAGCCCGCC
AAAAAGAAAAAACGGAAATGGCCGTGGGTTTTGCTGTCCGTCTGTTTCATTTTCATTATGGCGGCTGTTCTTGCTGTCAC
TGTGTTCCCGTCTTTATTTATGCCTAAAGATGTAAGCGTCCCCGACGTACGGGGCATGAAGTACGAAAAAGCGGAAGCAC
TGCTTGAAAAGAACGGGCTCCGGGCGGATCCTGATATAACGGACATTGAAGATGACAAAATAGAAGAGGAATTAATGGTC
AAAACGGACCCAAAAGCGGGGTCTACCGTTAAAGAAGGCTCTTCTGTAAAACTGTACAAAAGCATCGGAAAACCGAAAAC
CCAGCTGATCGACGTGAAAGGGCGGCAGATCGGCGACGCAAAAAAAGCGCTGAAGGACAAAGGCTTCAAACATGTCAATG
TCAAAGAAGAGAACGATGACAGCGAGGCCGGCACCGTAATTGATCAGGACCCGTCAGCCGGCACCGACATGGTCGGAAGC
GACGATGAAGTCAATCTAACGGTCAGCCTCGGCCCGGCGGACGTTACGCTGAGGGACTTAAAGACTTACAGCAAAGAAGC
GGCTTCAGGGTATCTTGAAGATAACGGCCTGCAGCTTGTTGAAAAACAAGCCCATTCAGATGACGTGCCAAAAGGACAAG
TCATGAAGCAAGAGCCGGCAGCCGGCACTGCTGTTAAGCCGGGAAGTAATGTTGAAGTGACGTTCTCGCTCGGACCTGAA
GAAAAACCGGCGAAAACGGTAAAAGAAAAAATCAGCATTCCTTACGAACCCGAACATGAAGGGGACGAGCTTGAAGTGCA
AATCGCCATCGATGATAAGGACCACAGTATCTCTGATACGTATGACTCATTTAAAATAAAAGAGCCGACTGAAAAAACAA
TTGAACTGAAGATTGATCAGGGACAGAAGGGGTATTACCAAGTGATGGTCGATCATAAAGTCGTCAGCTACAAAACGATT
GAATACCCGAAAGATAATGACTGA

Domains

Predicted by InterProScan.

Protein kinase domain (Pkinase)

(11-260)

PASTA domain (PASTA)

(431-489)

PASTA domain (PASTA)

(358-419)

PASTA domain (PASTA)

(495-556)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  stkP Streptococcus pneumoniae TIGR4

38.944

93.663

0.365
  stkP Streptococcus pneumoniae D39

38.779

93.663

0.363
  stkP Streptococcus pneumoniae R6

38.779

93.663

0.363
  stkP Streptococcus pneumoniae Rx1

38.614

93.663

0.362