Detailed information NTG0342589

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ETN89_RS07590
• Genome accession: NZ_CP035457
• Coordinates: 1621979..1622857 (-)
• Length: 292 a.a.
• NCBI ID: WP_086367531.1
• Uniprot ID: -
• Organism: Photobacterium damselae subsp. damselae strain KC-Na-NB1
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1616979..1627857

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ETN89_RS07565 (ETN89_07565)	secA	1617002..1619716 (+)	2715	WP_086367534.1	preprotein translocase subunit SecA	-
ETN89_RS07570 (ETN89_07570)	mutT	1619842..1620264 (-)	423	WP_129382700.1	8-oxo-dGTP diphosphatase MutT	-
ETN89_RS07575 (ETN89_07575)	yacG	1620352..1620561 (-)	210	WP_005297592.1	DNA gyrase inhibitor YacG	-
ETN89_RS07580 (ETN89_07580)	zapD	1620570..1621307 (-)	738	WP_005297594.1	cell division protein ZapD	-
ETN89_RS07585 (ETN89_07585)	coaE	1621375..1621977 (-)	603	WP_086367532.1	dephospho-CoA kinase	-
ETN89_RS07590 (ETN89_07590)	pilD	1621979..1622857 (-)	879	WP_086367531.1	A24 family peptidase	Machinery gene
ETN89_RS07595 (ETN89_07595)	pilC	1623040..1624266 (-)	1227	WP_086367530.1	type II secretion system F family protein	Machinery gene
ETN89_RS07600 (ETN89_07600)	pilB	1624333..1626024 (-)	1692	WP_086367529.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ETN89_RS07605 (ETN89_07605)	-	1626038..1626490 (-)	453	WP_086367528.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
ETN89_RS07610 (ETN89_07610)	ampD	1626877..1627455 (+)	579	WP_086367527.1	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	-

Sequence

Protein

• Length: 292 a.a.
• Molecular weight: 32605.13 Da
• Isoelectric Point: 8.0317

>NTDB_id=342589 ETN89_RS07590 WP_086367531.1 1621979..1622857(-) (pilD) [Photobacterium damselae subsp. damselae strain KC-Na-NB1]
MAIFSYYPWLFPVFATIFGLLVGSFLNVVIYRLPIMMERQWRNECIEAFPDLIKADAKLNTDTFNLSVPRSRCPHCGHLI
SAVENIPVISWLVLKGKCKSCHTPISRRYPMIELLTAALCGTVAILFPPTWWTVAVIFFTFALIALTFIDIDKMLLPDQI
TLPLLWAGIFLALLGISPVSLQDSVIGAIAGYLCLWSVFWIFKLLTQKDGMGYGDFKLLAALGAWLGWQMLPVVVLLSSL
AGAICGIILLKVQKSDHQTPFSFGPYLAIAGWICLLWGHSIITWYVSNILGM

Nucleotide

• Length: 879 bp

>NTDB_id=342589 ETN89_RS07590 WP_086367531.1 1621979..1622857(-) (pilD) [Photobacterium damselae subsp. damselae strain KC-Na-NB1]
ATGGCTATTTTCAGTTACTACCCTTGGCTATTTCCTGTTTTTGCTACCATTTTTGGCTTATTGGTAGGCAGCTTTCTCAA
TGTGGTGATCTATCGCTTACCCATTATGATGGAGCGTCAATGGCGTAACGAATGTATCGAAGCGTTTCCGGATTTAATCA
AAGCCGATGCGAAGTTAAATACCGACACATTTAATTTAAGCGTGCCGCGTTCTCGTTGTCCTCATTGTGGTCATCTCATT
AGTGCTGTAGAAAATATTCCTGTTATTAGTTGGCTGGTATTAAAGGGGAAGTGCAAATCCTGTCACACGCCGATTAGCCG
ACGTTACCCAATGATTGAACTGTTAACTGCAGCATTGTGTGGTACGGTTGCGATCCTATTTCCGCCAACTTGGTGGACGG
TTGCAGTAATCTTTTTCACTTTCGCCTTAATTGCTCTGACTTTTATCGATATTGATAAGATGCTACTGCCTGATCAAATC
ACCCTACCACTACTTTGGGCTGGTATTTTTCTCGCTCTATTAGGCATTAGTCCTGTATCACTACAAGATTCTGTGATTGG
TGCGATTGCGGGTTATCTCTGTTTGTGGAGCGTCTTTTGGATCTTTAAATTATTAACCCAAAAAGACGGTATGGGTTATG
GCGACTTTAAACTGTTAGCCGCTTTAGGAGCATGGCTTGGCTGGCAAATGCTGCCGGTTGTGGTTCTGCTATCCTCTCTT
GCCGGGGCGATTTGTGGCATTATCTTATTGAAAGTACAAAAAAGTGATCACCAAACCCCATTTTCCTTTGGTCCTTATCT
TGCGATTGCAGGCTGGATCTGTCTATTGTGGGGACACTCGATCATCACTTGGTATGTCAGTAATATTTTAGGAATGTAG

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (138-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	65.411	100	0.654
pilD	Vibrio cholerae strain A1552	61.775	100	0.62
pilD	Acinetobacter baumannii D1279779	52.045	92.123	0.479
pilD	Acinetobacter nosocomialis M2	52.045	92.123	0.479
pilD	Neisseria gonorrhoeae MS11	48.561	95.205	0.462