Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   ETT47_RS01435 Genome accession   NZ_CP035452
Coordinates   265983..267053 (+) Length   356 a.a.
NCBI ID   WP_136099271.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain emm123     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 260983..272053
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETT47_RS01420 (ETT47_01420) amiA 261502..263481 (+) 1980 WP_063629325.1 peptide ABC transporter substrate-binding protein Regulator
  ETT47_RS01425 (ETT47_01425) amiC 263546..265048 (+) 1503 WP_002991105.1 ABC transporter permease Regulator
  ETT47_RS01430 (ETT47_01430) amiD 265048..265974 (+) 927 WP_002986004.1 oligopeptide ABC transporter permease OppC Regulator
  ETT47_RS01435 (ETT47_01435) amiE 265983..267053 (+) 1071 WP_136099271.1 ABC transporter ATP-binding protein Regulator
  ETT47_RS01440 (ETT47_01440) amiF 267046..267969 (+) 924 WP_002986000.1 ABC transporter ATP-binding protein Regulator
  ETT47_RS09040 (ETT47_01445) - 268007..268096 (-) 90 WP_109821088.1 IS3 family transposase -
  ETT47_RS08765 - 268117..268362 (-) 246 WP_175393721.1 transposase -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 39706.77 Da        Isoelectric Point: 5.3046

>NTDB_id=342340 ETT47_RS01435 WP_136099271.1 265983..267053(+) (amiE) [Streptococcus pyogenes strain emm123]
MTKENNVILTAKDVVVEFDVRDRVLTAIRNVSLELVEGEVLAFVGESGSGKSVLTKTFTGMLESNGRIANGSIVYRGQEL
TDLKTNKEWAKIRGSKIATIFQDPMTSLSPIKTIGSQITEVIIKHQKVSNAKAKEMALDYMNKVGIPNAKKRFEDYPFEY
SGGMRQRIVIAIALACRPDILICDEPTTALDVTIQAQIVELLKSLQREYYFTIIFITHDLGVVASIADKVAVMYAGEIVE
FGTVEEIFYDPRHPYTWSLLSSLPQLADESGELYAIPGTPPSLYSPIIGDAFALRSEYAMVLDFEKAPPAINVSETHWAK
TWLLHPEAPKVQKPEVIQDLHQKILRKMSQQEEGNV

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=342340 ETT47_RS01435 WP_136099271.1 265983..267053(+) (amiE) [Streptococcus pyogenes strain emm123]
ATGACAAAAGAAAATAATGTAATCTTAACTGCCAAAGATGTGGTGGTAGAATTTGATGTGCGTGATCGTGTTTTAACAGC
TATCCGTAACGTCTCACTGGAACTTGTTGAAGGAGAAGTCCTTGCTTTTGTAGGGGAATCAGGCTCAGGTAAATCTGTTT
TAACAAAGACCTTTACAGGGATGTTGGAGTCTAATGGACGCATTGCTAATGGTTCAATTGTCTATCGTGGGCAAGAATTG
ACAGATTTAAAAACAAATAAAGAGTGGGCAAAGATTCGCGGCTCAAAAATCGCAACGATTTTCCAAGACCCAATGACCAG
TCTTAGTCCCATTAAAACTATCGGTAGCCAAATCACAGAAGTGATTATTAAGCACCAAAAAGTAAGTAATGCCAAAGCTA
AAGAAATGGCCCTTGATTACATGAATAAAGTGGGTATCCCAAATGCCAAAAAACGCTTTGAAGATTACCCATTTGAGTAT
TCAGGAGGAATGCGTCAACGTATTGTTATCGCTATTGCTTTAGCTTGTCGCCCAGATATTCTTATCTGTGATGAGCCAAC
AACAGCCCTTGATGTGACTATTCAAGCTCAAATCGTTGAGTTATTGAAGTCGCTTCAACGAGAATATTATTTCACCATTA
TCTTTATTACGCACGATTTAGGTGTTGTGGCAAGCATTGCAGATAAAGTGGCTGTCATGTATGCAGGAGAAATTGTTGAA
TTTGGAACAGTCGAAGAGATTTTCTATGATCCAAGACACCCCTATACATGGAGTTTGCTGTCTAGCTTACCGCAGTTGGC
AGATGAATCTGGTGAACTTTACGCTATTCCAGGAACGCCTCCATCACTTTATTCACCAATTATCGGAGATGCCTTTGCAC
TTCGCTCAGAATATGCTATGGTTTTAGACTTTGAAAAAGCACCTCCGGCGATTAACGTATCTGAGACTCATTGGGCCAAA
ACATGGCTTTTACACCCAGAGGCTCCAAAAGTTCAAAAACCAGAAGTCATTCAAGATTTGCATCAAAAAATCTTAAGGAA
AATGTCACAACAGGAGGAAGGAAATGTCTGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(29-187)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(239-299)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

76.667

100

0.775
  amiE Streptococcus thermophilus LMG 18311

75.556

100

0.764
  amiE Streptococcus thermophilus LMD-9

75.556

100

0.764
  oppD Streptococcus mutans UA159

56.677

94.663

0.537

Multiple sequence alignment