Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   ETT47_RS01430 Genome accession   NZ_CP035452
Coordinates   265048..265974 (+) Length   308 a.a.
NCBI ID   WP_002986004.1    Uniprot ID   Q1JNF8
Organism   Streptococcus pyogenes strain emm123     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 260048..270974
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETT47_RS01420 (ETT47_01420) amiA 261502..263481 (+) 1980 WP_063629325.1 peptide ABC transporter substrate-binding protein Regulator
  ETT47_RS01425 (ETT47_01425) amiC 263546..265048 (+) 1503 WP_002991105.1 ABC transporter permease Regulator
  ETT47_RS01430 (ETT47_01430) amiD 265048..265974 (+) 927 WP_002986004.1 oligopeptide ABC transporter permease OppC Regulator
  ETT47_RS01435 (ETT47_01435) amiE 265983..267053 (+) 1071 WP_136099271.1 ABC transporter ATP-binding protein Regulator
  ETT47_RS01440 (ETT47_01440) amiF 267046..267969 (+) 924 WP_002986000.1 ABC transporter ATP-binding protein Regulator
  ETT47_RS09040 (ETT47_01445) - 268007..268096 (-) 90 WP_109821088.1 IS3 family transposase -
  ETT47_RS08765 - 268117..268362 (-) 246 WP_175393721.1 transposase -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34862.81 Da        Isoelectric Point: 8.5670

>NTDB_id=342339 ETT47_RS01430 WP_002986004.1 265048..265974(+) (amiD) [Streptococcus pyogenes strain emm123]
MESIDKSKFRFVERDSEASEVIDTPAYSYWKSVFRQFFSKKSTVFMLVILVTVLMMSFIYPMFANYDFNDVSNINDFSKR
YIWPNAEYWFGTDKNGQSLFDGVWYGARNSILISVIATLINITIGVVLGAIWGVSKAFDKVMIEIYNIISNIPSMLIIIV
LTYSLGAGFWNLILAFCITGWIGVAYSIRVQILRYRDLEYNLASQTLGTPMYKIAVKNLLPQLVSVIMTMLSQMLPVYVS
SEAFLSFFGIGLPTTTPSLGRLIANYSSNLTTNAYLFWIPLVTLILVSLPLYIVGQNLADASDPRSHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=342339 ETT47_RS01430 WP_002986004.1 265048..265974(+) (amiD) [Streptococcus pyogenes strain emm123]
ATGGAATCGATTGATAAATCTAAATTTCGATTTGTTGAGCGCGATAGTGAAGCCTCCGAAGTGATTGATACCCCTGCTTA
TTCTTACTGGAAATCAGTGTTTCGTCAGTTTTTTTCTAAAAAATCTACAGTCTTTATGCTCGTAATTTTAGTGACAGTCT
TGATGATGAGCTTTATTTATCCAATGTTTGCCAACTACGACTTTAATGACGTTAGTAATATCAATGACTTTTCAAAGCGT
TATATTTGGCCAAATGCAGAGTACTGGTTTGGAACCGACAAAAATGGGCAATCTCTGTTTGATGGTGTTTGGTATGGGGC
ACGTAATTCTATTTTAATCTCAGTTATAGCGACACTAATTAATATCACCATTGGGGTAGTGTTAGGAGCCATATGGGGAG
TTTCTAAAGCATTTGATAAAGTTATGATTGAAATTTATAACATTATCTCAAATATCCCTTCTATGCTTATTATCATTGTT
TTGACCTATTCATTAGGTGCAGGATTTTGGAATTTGATTCTAGCTTTCTGTATCACTGGATGGATTGGTGTCGCCTACTC
CATCCGTGTTCAAATCTTGCGTTACCGTGATTTAGAATACAACCTTGCTAGTCAAACTTTGGGAACACCAATGTACAAGA
TTGCTGTTAAGAACCTCCTGCCTCAATTGGTTTCAGTTATCATGACTATGTTGTCACAAATGCTACCAGTTTATGTATCT
TCTGAGGCCTTCTTATCCTTCTTTGGGATTGGTTTACCAACCACCACTCCAAGTTTAGGACGTTTGATTGCTAATTATTC
AAGCAACTTAACAACAAATGCCTACCTCTTTTGGATTCCCTTAGTAACATTGATTTTAGTATCATTACCACTATACATTG
TCGGACAAAACTTGGCTGATGCCAGTGACCCACGTTCACATAGATAG

Domains

Predicted by InterproScan.

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-72)

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-305)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q1JNF8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

73.701

100

0.737
  amiD Streptococcus thermophilus LMG 18311

73.052

100

0.731
  amiD Streptococcus thermophilus LMD-9

73.052

100

0.731

Multiple sequence alignment