Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   F7G16_RS07500 Genome accession   NZ_CP044352
Coordinates   1679080..1679769 (+) Length   229 a.a.
NCBI ID   WP_011097770.1    Uniprot ID   B2IAF1
Organism   Xylella fastidiosa strain ATCC 35879     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1674080..1684769
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F7G16_RS07470 (F7G16_07745) - 1674300..1674542 (+) 243 WP_004087863.1 type B 50S ribosomal protein L31 -
  F7G16_RS07475 (F7G16_07750) - 1674769..1676058 (+) 1290 WP_004087864.1 citrate synthase -
  F7G16_RS07480 (F7G16_07755) rpsI 1676275..1676667 (-) 393 WP_004087865.1 30S ribosomal protein S9 -
  F7G16_RS07485 (F7G16_07760) rplM 1676672..1677100 (-) 429 WP_004083669.1 50S ribosomal protein L13 -
  F7G16_RS07490 (F7G16_07765) coq7 1677321..1677974 (+) 654 WP_011097769.1 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinone monooxygenase -
  F7G16_RS07495 (F7G16_07770) speD 1678143..1678937 (-) 795 WP_004087867.1 adenosylmethionine decarboxylase -
  F7G16_RS07500 (F7G16_07775) crp 1679080..1679769 (+) 690 WP_011097770.1 cAMP-activated global transcriptional regulator CRP Regulator
  F7G16_RS07505 (F7G16_07780) - 1680171..1680344 (+) 174 WP_225621606.1 hypothetical protein -
  F7G16_RS07510 (F7G16_07785) - 1680541..1680732 (+) 192 WP_243857828.1 Blp family class II bacteriocin -
  F7G16_RS07515 (F7G16_07790) - 1680750..1680950 (+) 201 WP_004087870.1 hypothetical protein -
  F7G16_RS07525 (F7G16_07800) - 1681617..1682414 (-) 798 WP_004087872.1 tRNA threonylcarbamoyladenosine dehydratase -
  F7G16_RS07530 (F7G16_07810) - 1683185..1683646 (+) 462 WP_004087873.1 glycine zipper 2TM domain-containing protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25511.27 Da        Isoelectric Point: 9.6366

>NTDB_id=342176 F7G16_RS07500 WP_011097770.1 1679080..1679769(+) (crp) [Xylella fastidiosa strain ATCC 35879]
MTIGNTTSVTTVRNATPPLALDNAAIERFLAHSHRRRYPNRTDVFRPGDPAGTLYYVISGSISIIAEEDDHRELVLGYFG
AGEFVGEMGLFIESDAREVILRTRTQCELAEVSYERLHQLLQGSLASDAPRILYAIGMQLSKRLLLTTRKASRLAFLDVG
DRILRTLHDLARDPEAMSHPQGTQLRVSRQELARLVGCSREMAGRVLKKLQADGLLHARGKTVVLYGTR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=342176 F7G16_RS07500 WP_011097770.1 1679080..1679769(+) (crp) [Xylella fastidiosa strain ATCC 35879]
ATGACTATAGGGAACACTACGAGTGTGACAACGGTACGTAACGCTACTCCGCCTTTAGCTCTCGACAATGCGGCGATCGA
GCGCTTCTTGGCTCACAGTCATCGACGCCGCTACCCCAACCGAACGGATGTGTTTAGGCCTGGTGACCCTGCTGGAACCC
TTTACTATGTTATCAGCGGGTCTATCAGCATCATCGCCGAGGAAGACGATCATCGTGAGCTGGTTCTTGGCTATTTCGGA
GCAGGTGAGTTTGTGGGTGAGATGGGTTTATTCATCGAATCCGATGCTCGTGAAGTCATCTTACGTACACGGACTCAGTG
TGAATTGGCTGAGGTAAGTTACGAGCGCTTGCACCAGCTGTTGCAAGGCAGTTTAGCGAGTGATGCGCCGCGGATTTTGT
ATGCGATAGGTATGCAGTTATCTAAGCGTTTATTGCTTACCACCCGTAAGGCGAGTCGTCTGGCTTTTCTGGATGTGGGG
GATCGGATCTTGCGCACCTTACATGATCTGGCTCGCGATCCAGAGGCAATGAGTCATCCTCAGGGTACACAGTTGAGGGT
GTCACGTCAGGAGCTTGCGCGTCTGGTTGGATGCTCGCGTGAAATGGCTGGACGTGTGCTTAAGAAGTTGCAAGCGGATG
GTCTGTTACATGCGCGCGGCAAAACCGTTGTTCTGTACGGAACGCGTTGA

Domains

Predicted by InterProScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(35-122)

Bacterial regulatory proteins, crp family (Crp)

(185-216)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B2IAF1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Haemophilus influenzae Rd KW20

45.411

90.393

0.41
  crp Acinetobacter baumannii D1279779

45.588

89.083

0.406
  crp Vibrio cholerae strain A1552

42.995

90.393

0.389

Multiple sequence alignment