Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX/comX2/sigX2   Type   Regulator
Locus tag   ETT50_RS01470 Genome accession   NZ_CP035449
Coordinates   267531..268082 (+) Length   183 a.a.
NCBI ID   WP_010921894.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain emm56     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 262531..273082
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETT50_RS01470 (ETT50_01470) comX/sigX/comX2/sigX2 267531..268082 (+) 552 WP_010921894.1 sigma-70 family RNA polymerase sigma factor Regulator
  ETT50_RS01475 (ETT50_01475) truA 268267..269016 (+) 750 WP_002988132.1 tRNA pseudouridine(38-40) synthase TruA -
  ETT50_RS01480 (ETT50_01480) - 269006..269770 (+) 765 WP_032465223.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  ETT50_RS01485 (ETT50_01485) - 269760..270230 (+) 471 WP_002988139.1 ECF transporter S component -
  ETT50_RS01490 (ETT50_01490) - 270244..270804 (+) 561 WP_002995157.1 TIGR01440 family protein -
  ETT50_RS01495 (ETT50_01495) - 270869..271714 (-) 846 WP_032465222.1 mechanosensitive ion channel family protein -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 22281.08 Da        Isoelectric Point: 10.0375

>NTDB_id=342176 ETT50_RS01470 WP_010921894.1 267531..268082(+) (comX/sigX/comX2/sigX2) [Streptococcus pyogenes strain emm56]
MSCCFFVVLFILGIVKKKRRLKMSIETRAAFEKVKPIILKLKRHYYIQLWDRDDWLQEGHIILLQLLERYPELIEEEERL
YRYFKTKFSSYLKDLLRRQESQKRQFHKLAYEEIGEVAHAIPSRGLWLDDYVAYQEVIASLENQLNSQERMQFQALIRGE
RFKGRRALLRKISPYFKEFAQQL

Nucleotide


Download         Length: 552 bp        

>NTDB_id=342176 ETT50_RS01470 WP_010921894.1 267531..268082(+) (comX/sigX/comX2/sigX2) [Streptococcus pyogenes strain emm56]
GTGTCCTGTTGTTTTTTTGTGGTTCTCTTTATACTAGGGATAGTTAAAAAGAAAAGGAGACTCAAAATGTCGATAGAGAC
AAGAGCAGCGTTTGAAAAAGTTAAGCCCATTATTTTGAAATTAAAGCGACACTATTATATTCAATTGTGGGATAGAGATG
ACTGGTTACAAGAAGGACATATTATTTTATTACAGTTACTAGAAAGGTACCCAGAGTTAATTGAGGAAGAAGAGCGTTTA
TATCGCTATTTTAAAACAAAATTTTCATCTTATTTGAAAGATTTATTACGCCGTCAAGAAAGTCAAAAGCGTCAGTTCCA
TAAGTTAGCATATGAAGAGATAGGGGAGGTTGCACATGCCATTCCATCGAGAGGGTTATGGCTAGACGACTATGTGGCTT
ATCAAGAGGTAATAGCTAGCTTAGAGAACCAATTAAATTCGCAAGAGCGTATGCAGTTTCAAGCACTTATCAGGGGCGAA
CGTTTCAAGGGAAGACGTGCTCTACTTAGGAAGATCAGTCCCTATTTTAAGGAATTTGCACAGCAGTTGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.