Detailed information NTG0342154

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: F7G16_RS02460
• Genome accession: NZ_CP044352
• Coordinates: 565149..566429 (+)
• Length: 426 a.a.
• NCBI ID: WP_004090165.1
• Uniprot ID: Q87E50
• Organism: Xylella fastidiosa strain ATCC 35879
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 560149..571429

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
F7G16_RS02440 (F7G16_02550)	-	560593..561054 (-)	462	WP_004086550.1	hypothetical protein	-
F7G16_RS02450 (F7G16_02560)	tig	562963..564257 (+)	1295	Protein_457	trigger factor	-
F7G16_RS02455 (F7G16_02565)	clpP	564395..565021 (+)	627	WP_011097655.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
F7G16_RS02460 (F7G16_02570)	clpX	565149..566429 (+)	1281	WP_004090165.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
F7G16_RS02465 (F7G16_02575)	lon	566581..569052 (+)	2472	WP_012382467.1	endopeptidase La	-
F7G16_RS02470 (F7G16_02580)	-	569273..569557 (+)	285	WP_004090176.1	HU family DNA-binding protein	-

Sequence

Protein

• Length: 426 a.a.
• Molecular weight: 47129.13 Da
• Isoelectric Point: 5.6270

>NTDB_id=342154 F7G16_RS02460 WP_004090165.1 565149..566429(+) (clpX) [Xylella fastidiosa strain ATCC 35879]
MSEDRQSRSGDGNKILYCSFCGKSQREVRKLIAGPSVFICDECVELCNDIIREELEEKSQSARSSLPKPKEILEVLDQYV
IGQQRAKRTLAVAVYNHYKRIESRHKNDDIELAKSNILLVGPTGSGKTLLAETLARLLNVPFTIADATTLTEAGYVGEDV
ENIIQKLLHKCDYDVEKAQHGIVYIDEIDKISRKSENPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV
DTKNILFICGGAFAGLDKVIQQRCNEVGGIGFGVKVKSSESKRDVGKVLAGVEPEDLIKFGLIPEFVGRLPVVATLDELD
ESALVKILTEPKNAITKQFKKLFEMENVELEFRQDALSAVARKALKRKTGARGLRTIVELVLLDTMYELPSQEGISKVVV
DESVIENKSEPYLIYQTMPAKVASGE

Nucleotide

• Length: 1281 bp

>NTDB_id=342154 F7G16_RS02460 WP_004090165.1 565149..566429(+) (clpX) [Xylella fastidiosa strain ATCC 35879]
ATGAGCGAAGACCGGCAAAGCCGTTCTGGTGACGGAAATAAGATTCTTTACTGCTCATTCTGCGGTAAAAGCCAGCGTGA
GGTTCGCAAGCTGATCGCAGGTCCAAGCGTATTCATTTGTGATGAATGCGTTGAGTTGTGTAACGATATTATTCGCGAGG
AACTGGAAGAGAAGTCGCAATCTGCGCGTTCCAGTTTGCCTAAGCCCAAGGAGATACTTGAGGTTTTGGATCAGTATGTC
ATTGGCCAGCAGCGTGCTAAGAGGACTCTTGCTGTAGCCGTCTACAATCATTATAAACGGATCGAAAGTCGGCATAAGAA
TGACGACATCGAATTGGCTAAATCTAATATTTTGTTGGTTGGCCCAACAGGCTCCGGCAAGACATTGCTTGCCGAGACAT
TGGCGCGTTTGCTGAATGTGCCTTTCACGATTGCCGATGCAACCACATTGACTGAGGCTGGCTATGTTGGTGAGGACGTG
GAGAATATTATTCAGAAGTTGTTACATAAGTGTGATTACGACGTTGAAAAGGCGCAACATGGGATCGTCTACATTGATGA
AATAGATAAGATTTCCCGTAAGAGTGAGAATCCATCAATTACCCGAGATGTTTCTGGTGAGGGTGTGCAGCAGGCATTGC
TGAAATTGATAGAAGGTACGGTTGCTTCTGTGCCTCCTCAGGGTGGTCGCAAGCATCCACAGCAGGAATTCCTGCAGGTC
GATACCAAAAATATTTTATTCATCTGTGGCGGTGCTTTTGCTGGTCTAGATAAAGTGATCCAACAGCGTTGCAATGAAGT
TGGTGGTATTGGCTTTGGTGTTAAGGTCAAAAGCTCAGAGAGTAAGCGCGATGTTGGTAAGGTACTAGCTGGTGTCGAGC
CAGAGGACCTGATTAAGTTTGGGTTAATCCCTGAATTCGTTGGGCGATTGCCAGTTGTAGCTACACTTGATGAGCTGGAT
GAGTCGGCTTTGGTTAAAATTTTAACCGAGCCAAAGAACGCTATTACAAAGCAGTTCAAAAAGCTGTTTGAGATGGAGAA
CGTAGAGTTGGAGTTCCGTCAGGACGCGCTTTCAGCAGTGGCTAGGAAAGCTCTTAAGCGCAAGACTGGTGCGCGGGGTC
TCCGTACTATTGTTGAGTTGGTTCTGCTGGATACCATGTACGAACTTCCTTCTCAGGAAGGTATTAGTAAGGTTGTTGTC
GATGAATCGGTTATTGAAAATAAATCTGAGCCTTATCTGATTTATCAAACGATGCCTGCAAAGGTTGCTTCCGGCGAATG
A

Domains

Predicted by InterProScan.

• AAA domain (Cdc48 subfamily) (AAA_2) (114-312)

• ClpX C4-type zinc finger (zf-C4_ClpX) (16-53)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (319-396)

3D structure

• AlphaFold DB: Q87E50

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	62.25	93.897	0.585
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	55.025	93.427	0.514