Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYF   Type   Machinery gene
Locus tag   ETT54_RS00620 Genome accession   NZ_CP035445
Coordinates   98883..99317 (+) Length   144 a.a.
NCBI ID   WP_002992738.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain emm92     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 93883..104317
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETT54_RS00590 (ETT54_00590) - 95566..95931 (+) 366 WP_002986560.1 DUF1033 family protein -
  ETT54_RS00595 (ETT54_00595) comGA 96024..96948 (+) 925 Protein_80 competence type IV pilus ATPase ComGA -
  ETT54_RS00600 (ETT54_00600) comYB 96884..97918 (+) 1035 WP_227868709.1 competence type IV pilus assembly protein ComGB Machinery gene
  ETT54_RS00605 (ETT54_00605) comYC 97920..98246 (+) 327 WP_002986552.1 competence type IV pilus major pilin ComGC Machinery gene
  ETT54_RS00610 (ETT54_00610) comGD 98221..98649 (+) 429 WP_002986548.1 competence type IV pilus minor pilin ComGD -
  ETT54_RS00615 (ETT54_00615) comGE 98606..98890 (+) 285 WP_011284422.1 competence type IV pilus minor pilin ComGE -
  ETT54_RS00620 (ETT54_00620) comYF 98883..99317 (+) 435 WP_002992738.1 competence type IV pilus minor pilin ComGF Machinery gene
  ETT54_RS00625 (ETT54_00625) comGG 99301..99627 (+) 327 WP_010921801.1 competence type IV pilus minor pilin ComGG -
  ETT54_RS00630 (ETT54_00630) comYH 99725..100678 (+) 954 WP_038433850.1 class I SAM-dependent methyltransferase Machinery gene
  ETT54_RS00635 (ETT54_00635) - 100737..101933 (+) 1197 WP_111711330.1 acetate kinase -
  ETT54_RS00640 (ETT54_00640) - 102120..102419 (+) 300 Protein_89 hypothetical protein -
  ETT54_RS00645 (ETT54_00645) proC 102502..103272 (-) 771 WP_038433852.1 pyrroline-5-carboxylate reductase -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16645.27 Da        Isoelectric Point: 10.2526

>NTDB_id=341947 ETT54_RS00620 WP_002992738.1 98883..99317(+) (comYF) [Streptococcus pyogenes strain emm92]
MSKQLSNIKAFTLLEALIALLVISGSLLVYQGLTQTLLKRSHYLARHDQDNWLLFSHQLREELSGARFYKVADNKLYVEK
GKKVLAFGQFKSHDFRKSASNGKGYQPMLFGISRSHIHIEQSQICITLKWKSGLERTFYYAFQD

Nucleotide


Download         Length: 435 bp        

>NTDB_id=341947 ETT54_RS00620 WP_002992738.1 98883..99317(+) (comYF) [Streptococcus pyogenes strain emm92]
TTGAGTAAACAATTAAGTAACATAAAAGCTTTTACCCTTCTAGAGGCGTTAATAGCCTTACTCGTGATATCAGGGTCTTT
ATTGGTTTATCAAGGTTTGACCCAAACCCTCCTTAAACGTAGCCATTATCTAGCCCGTCATGATCAAGACAATTGGCTCT
TATTTTCTCATCAATTGCGAGAGGAGTTAAGTGGAGCAAGATTTTACAAAGTAGCTGATAATAAACTATACGTTGAAAAA
GGAAAGAAAGTACTAGCTTTTGGCCAATTTAAAAGTCATGATTTTCGAAAATCAGCTAGTAATGGAAAAGGGTATCAACC
CATGTTATTTGGAATATCACGTAGTCATATTCACATAGAGCAGTCACAGATTTGCATTACTTTAAAGTGGAAAAGTGGGT
TAGAAAGGACTTTTTATTATGCCTTTCAAGACTAA

Domains

Predicted by InterproScan.

Putative Competence protein ComGF (ComGF)

(41-135)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYF Streptococcus mutans UA140

51.079

96.528

0.493
  comYF Streptococcus mutans UA159

50.36

96.528

0.486
  comGF Lactococcus lactis subsp. cremoris KW2

46.715

95.139

0.444
  comGF/cglF Streptococcus mitis NCTC 12261

44.776

93.056

0.417
  comGF/cglF Streptococcus pneumoniae Rx1

43.609

92.361

0.403
  comGF/cglF Streptococcus pneumoniae D39

43.609

92.361

0.403
  comGF/cglF Streptococcus pneumoniae R6

43.609

92.361

0.403
  comGF/cglF Streptococcus pneumoniae TIGR4

43.609

92.361

0.403
  comGF/cglF Streptococcus mitis SK321

42.857

92.361

0.396

Multiple sequence alignment