Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   F7D04_RS14735 Genome accession   NZ_CP044313
Coordinates   2911827..2912459 (+) Length   210 a.a.
NCBI ID   WP_000242755.1    Uniprot ID   A0A1C4FZU4
Organism   Escherichia coli strain RM11911     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2906827..2917459
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F7D04_RS14710 yheS 2906996..2908909 (+) 1914 WP_000634793.1 ABC transporter ATP-binding protein -
  F7D04_RS14715 yheT 2908909..2909931 (+) 1023 WP_000057356.1 hydrolase -
  F7D04_RS14720 yheU 2909925..2910143 (+) 219 WP_000907085.1 YheU family protein -
  F7D04_RS14725 prkB 2910197..2911066 (+) 870 WP_001274684.1 phosphoribulokinase -
  F7D04_RS14730 yhfA 2911121..2911525 (-) 405 WP_001148908.1 OsmC family protein -
  F7D04_RS14735 crp 2911827..2912459 (+) 633 WP_000242755.1 cAMP-activated global transcriptional regulator CRP Regulator
  F7D04_RS14740 yhfK 2912510..2914600 (+) 2091 WP_001297515.1 YccS/YhfK family putative transporter -
  F7D04_RS14745 argD 2914667..2915887 (-) 1221 WP_000963792.1 bifunctional acetylornithine/succinyldiaminopimelate transaminase -
  F7D04_RS14750 pabA 2915974..2916537 (-) 564 WP_000601847.1 aminodeoxychorismate synthase component 2 -
  F7D04_RS14755 fic 2916569..2917171 (-) 603 WP_001280624.1 putative adenosine monophosphate-protein transferase Fic -
  F7D04_RS14760 yhfG 2917161..2917328 (-) 168 WP_000736860.1 YhfG family protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23640.43 Da        Isoelectric Point: 8.2710

>NTDB_id=341944 F7D04_RS14735 WP_000242755.1 2911827..2912459(+) (crp) [Escherichia coli strain RM11911]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTSEKVGNLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=341944 F7D04_RS14735 WP_000242755.1 2911827..2912459(+) (crp) [Escherichia coli strain RM11911]
ATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCATCCAA
GAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGTGCTGATCAAAG
ACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGCCTGTTTGAAGAGGGC
CAGGAACGTAGCGCATGGGTACGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGAT
TCAGGTAAACCCGGACATTCTGATGCGTCTGTCTGCACAGATGGCGCGTCGTCTGCAAGTCACTTCAGAGAAAGTGGGCA
ACCTGGCGTTCCTCGACGTGACGGGCCGCATTGCACAGACTCTGCTGAACCTGGCAAAACAACCAGATGCTATGACTCAC
CCGGACGGTATGCAAATCAAAATTACCCGTCAGGAAATCGGTCAGATTGTCGGCTGTTCTCGTGAAACCGTGGGACGCAT
TCTGAAGATGCTGGAAGATCAGAACCTGATCTCCGCACACGGTAAAACCATCGTCGTTTACGGCACTCGTTAA

Domains

Predicted by InterProScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C4FZU4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

95.714

100

0.957
  crp Haemophilus influenzae Rd KW20

77.941

97.143

0.757
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467