Detailed information    

insolico Bioinformatically predicted

Overview

Name   ciaR   Type   Regulator
Locus tag   F7D05_RS20665 Genome accession   NZ_CP044312
Coordinates   4195788..4196447 (+) Length   219 a.a.
NCBI ID   WP_001221502.1    Uniprot ID   B7LGG8
Organism   Escherichia coli strain RM13745     
Function   repress competence development; post-transcriptional repression of CSP production (predicted from homology)   
Competence regulation

Genomic Context

Location: 4190788..4201447
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F7D05_RS20645 (F7D05_21030) plsC 4190935..4191672 (-) 738 WP_000965712.1 1-acylglycerol-3-phosphate O-acyltransferase -
  F7D05_RS20650 (F7D05_21035) parC 4191905..4194163 (-) 2259 WP_001281881.1 DNA topoisomerase IV subunit A -
  F7D05_RS20655 (F7D05_21040) ygiV 4194709..4195191 (-) 483 WP_000183481.1 GyrI-like domain-containing protein -
  F7D05_RS20660 (F7D05_21045) ygiW 4195244..4195636 (-) 393 WP_000712658.1 OB fold stress tolerance protein YgiW -
  F7D05_RS20665 (F7D05_21050) ciaR 4195788..4196447 (+) 660 WP_001221502.1 quorum sensing response regulator transcription factor QseB Regulator
  F7D05_RS20670 (F7D05_21055) qseC 4196444..4197794 (+) 1351 Protein_4103 quorum sensing histidine kinase QseC -
  F7D05_RS20675 (F7D05_21060) ygiZ 4197840..4198172 (-) 333 WP_000912120.1 DUF2645 family protein -
  F7D05_RS20680 (F7D05_21065) mdaB 4198491..4199072 (+) 582 WP_000065430.1 NADPH:quinone oxidoreductase MdaB -
  F7D05_RS20685 (F7D05_21070) ygiN 4199103..4199417 (+) 315 WP_000958598.1 putative quinol monooxygenase -
  F7D05_RS20690 (F7D05_21075) parE 4199465..4201357 (-) 1893 WP_038976822.1 DNA topoisomerase IV subunit B -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 24745.66 Da        Isoelectric Point: 6.6543

>NTDB_id=341880 F7D05_RS20665 WP_001221502.1 4195788..4196447(+) (ciaR) [Escherichia coli strain RM13745]
MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDILREWREKGQREPVLILTA
RDALEERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLEL
LMRNAGRVLPRKLIEEKLYTWDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLGEK

Nucleotide


Download         Length: 660 bp        

>NTDB_id=341880 F7D05_RS20665 WP_001221502.1 4195788..4196447(+) (ciaR) [Escherichia coli strain RM13745]
ATGCGAATTTTACTGATAGAAGATGACATGCTGATTGGCGACGGCATCAAAACGGGCCTTAGTAAAATGGGTTTTAGCGT
CGACTGGTTTACACAAGGTCGTCAGGGAAAAGAGGCGCTTTATAGCGCGCCTTATGATGCGGTGATCCTGGATTTAACCT
TACCAGGCATGGATGGTCGCGATATTTTGCGCGAATGGCGAGAAAAAGGTCAGCGTGAGCCGGTACTGATCCTGACCGCG
CGCGATGCGCTGGAGGAACGTGTAGAAGGGCTGCGTCTGGGAGCTGACGATTATCTGTGTAAACCTTTTGCGTTGATAGA
AGTCGCCGCCAGGCTGGAAGCTCTGATGCGCCGAACCAACGGCCAGGCCAGCAACGAGCTGCGCCACGGTAACGTCATGC
TCGACCCCGGCAAACGTATCGCCACGCTGGCTGGCGAACCCTTAACACTGAAACCAAAAGAATTTGCCCTGCTGGAATTA
CTGATGCGTAACGCTGGTCGGGTACTGCCGCGCAAACTGATTGAAGAGAAACTGTATACCTGGGACGAAGAGGTCACCAG
TAATGCCGTTGAAGTGCATGTGCATCATCTGCGACGCAAACTCGGTAGTGATTTTATTCGTACCGTGCATGGTATTGGCT
ACACATTAGGTGAGAAATGA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(145-216)

Response regulator receiver domain (Response_reg)

(3-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B7LGG8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaR Streptococcus pneumoniae Rx1

38.326

100

0.397
  ciaR Streptococcus pneumoniae D39

38.326

100

0.397
  ciaR Streptococcus pneumoniae R6

38.326

100

0.397
  ciaR Streptococcus pneumoniae TIGR4

38.326

100

0.397
  ciaR Streptococcus mutans UA159

35.874

100

0.365

Multiple sequence alignment