Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   ETT56_RS01410 Genome accession   NZ_CP035443
Coordinates   260509..262479 (+) Length   656 a.a.
NCBI ID   WP_063633020.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain emm58     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 255509..267479
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETT56_RS01390 (ETT56_01390) sufU 255555..256034 (+) 480 WP_002986018.1 Fe-S cluster assembly sulfur transfer protein SufU -
  ETT56_RS01395 (ETT56_01395) sufB 256027..257445 (+) 1419 WP_002986015.1 Fe-S cluster assembly protein SufB -
  ETT56_RS01400 (ETT56_01400) - 257597..258778 (-) 1182 WP_063633019.1 D-alanyl-D-alanine carboxypeptidase family protein -
  ETT56_RS01405 (ETT56_01405) pbp3 258946..260178 (-) 1233 WP_002992223.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  ETT56_RS01410 (ETT56_01410) amiA 260509..262479 (+) 1971 WP_063633020.1 peptide ABC transporter substrate-binding protein Regulator
  ETT56_RS01415 (ETT56_01415) amiC 262544..264046 (+) 1503 WP_011017334.1 ABC transporter permease Regulator
  ETT56_RS01420 (ETT56_01420) amiD 264046..264972 (+) 927 WP_023610798.1 oligopeptide ABC transporter permease OppC Regulator
  ETT56_RS01425 (ETT56_01425) amiE 264981..266051 (+) 1071 WP_010921893.1 ABC transporter ATP-binding protein Regulator
  ETT56_RS01430 (ETT56_01430) amiF 266044..266967 (+) 924 WP_023610800.1 ABC transporter ATP-binding protein Regulator
  ETT56_RS09995 (ETT56_01435) - 267005..267094 (-) 90 WP_085577405.1 IS3 family transposase -
  ETT56_RS01440 (ETT56_01440) - 267115..267294 (-) 180 WP_111695866.1 transposase -

Sequence

Protein


Download         Length: 656 a.a.        Molecular weight: 72009.38 Da        Isoelectric Point: 5.1180

>NTDB_id=341845 ETT56_RS01410 WP_063633020.1 260509..262479(+) (amiA) [Streptococcus pyogenes strain emm58]
MKKSKWLAAVSVAILSVSALAACGNKNASGGSEATKTYKYVFVNDPKSLDYILTNGGGTTDVITQMVDGLLENDEYGNLV
PSLAKDWKVSKDGLTYTYTLRDGVSWYTADGEEYAPVTAEDFVTGLKHAVDDKSDALYVVEDSIKNLKAYQNGEVDFKEV
GVKALDDKTVQYTLNKPESYWNSKTTYSVLFPVNAKFLKSKGKDFGTTDPSSILVNGAYFLSAFTSKSSMEFHKNENYWD
AKNVGIESVKLTYSDGSDSGSFYKNFDKGEFSVARLYPNDPTYKSAKKNYADNITYGMLTGDIRHLTWNLNRTSFKNTKK
DPAQQDAGKKALNNKDFRQAIQFAFDRASFQAQTAGQDAKTKALRNMLVPPTFVTVGESDFGSEVEKEMAKLGDEWKDVN
LADAQDGFYNPEKAKAEFAKAKEALTAEGVTFPVQLDYPVDQANAATVQEAQSFKQSVEASLGKENVIVNVLETETSTHE
AQGFYAETPEQQDYDIISSWWGPDYQDPRTYLDIMSPVGGGSVIQKLGIKAGQNKDVVAAAGLDTYQTLLDEAAAITDDN
DARYKAYAKAQAYLTDSAVDIPVVALGGTPRVTKAVPFSGGFSWAGSKGPLAYKGMKLQDKPVTAKQYENAKEKWMKAKA
KSNAKYAEKLADHVEK

Nucleotide


Download         Length: 1971 bp        

>NTDB_id=341845 ETT56_RS01410 WP_063633020.1 260509..262479(+) (amiA) [Streptococcus pyogenes strain emm58]
ATGAAGAAAAGTAAATGGTTGGCAGCTGTAAGTGTTGCGATCTTGTCAGTATCCGCTTTGGCAGCTTGTGGTAATAAAAA
TGCTTCAGGTGGCTCAGAAGCTACAAAAACCTACAAGTACGTTTTTGTTAACGATCCAAAATCATTGGATTATATTTTGA
CTAATGGCGGTGGAACGACTGATGTGATAACACAAATGGTTGATGGTCTTTTGGAAAACGATGAGTATGGTAATTTAGTA
CCATCACTTGCTAAAGATTGGAAGGTTTCAAAAGACGGTCTGACTTATACTTATACTCTTCGCGATGGTGTCTCTTGGTA
TACGGCTGATGGTGAAGAATATGCCCCAGTAACAGCAGAAGATTTTGTGACTGGTTTGAAGCACGCGGTTGACGATAAAT
CAGATGCTCTTTACGTTGTTGAAGATTCAATAAAAAACTTAAAGGCTTACCAAAATGGTGAAGTAGATTTTAAAGAAGTT
GGTGTCAAAGCCCTTGACGATAAAACTGTTCAGTATACTTTGAACAAGCCTGAAAGCTACTGGAATTCAAAAACAACTTA
TAGTGTGCTTTTCCCAGTTAATGCGAAATTTTTGAAGTCAAAAGGTAAAGATTTTGGTACAACCGATCCATCATCAATCC
TTGTTAATGGTGCTTACTTCTTGAGCGCCTTCACCTCAAAATCATCTATGGAATTCCATAAAAATGAAAACTACTGGGAT
GCTAAGAATGTTGGGATAGAATCTGTTAAATTGACTTACTCAGATGGTTCAGACTCAGGTTCGTTCTACAAGAACTTTGA
CAAGGGTGAGTTCAGCGTTGCACGACTTTACCCAAATGACCCTACCTACAAATCAGCTAAGAAAAACTATGCTGATAACA
TTACTTACGGAATGTTGACTGGAGATATCCGTCATTTAACATGGAATTTGAACCGTACTTCTTTCAAAAACACTAAGAAA
GACCCTGCACAACAAGATGCCGGTAAGAAAGCTCTTAACAACAAGGATTTTCGTCAAGCTATTCAGTTTGCTTTTGACCG
AGCGTCATTCCAAGCCCAAACTGCAGGTCAAGATGCCAAAACAAAAGCCTTACGTAACATGCTTGTGCCACCAACTTTTG
TAACCGTTGGAGAAAGTGATTTTGGTTCAGAAGTTGAAAAGGAAATGGCAAAACTTGGTGATGAATGGAAAGACGTTAAC
TTAGCTGATGCTCAAGATGGTTTCTATAATCCTGAAAAAGCAAAAGCTGAGTTTGCAAAAGCTAAAGAAGCTTTGACAGC
TGAAGGTGTAACCTTCCCAGTTCAATTAGATTACCCTGTTGACCAAGCAAACGCAGCAACTGTTCAGGAAGCCCAGTCTT
TCAAACAATCTGTTGAAGCATCTCTTGGTAAAGAAAATGTCATTGTCAATGTTCTTGAAACAGAAACATCAACTCACGAA
GCCCAAGGCTTCTATGCTGAGACCCCAGAACAACAAGACTACGATATCATTTCATCATGGTGGGGACCAGACTACCAAGA
TCCACGGACCTACCTTGACATCATGAGTCCAGTAGGTGGTGGATCTGTTATCCAAAAACTTGGAATCAAAGCAGGTCAAA
ATAAGGATGTTGTGGCAGCTGCAGGCCTTGATACTTACCAAACTCTCCTTGATGAAGCAGCAGCAATTACAGACGACAAC
GATGCGCGCTATAAAGCTTACGCAAAAGCACAAGCCTACCTTACAGATAGTGCCGTAGATATTCCAGTTGTGGCATTGGG
TGGCACTCCACGAGTTACTAAAGCCGTTCCATTTAGCGGGGGCTTCTCTTGGGCAGGGTCTAAAGGTCCTCTAGCATATA
AAGGAATGAAACTTCAAGACAAACCTGTCACAGCAAAACAATACGAAAATGCAAAAGAAAAATGGATGAAAGCAAAGGCT
AAGTCAAATGCAAAATATGCTGAGAAGTTAGCTGATCACGTTGAAAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(79-515)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

51.286

100

0.517
  amiA3 Streptococcus thermophilus LMG 18311

50

100

0.505
  amiA3 Streptococcus thermophilus LMD-9

49.698

100

0.502

Multiple sequence alignment