Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   F6P95_RS16680 Genome accession   NZ_CP044293
Coordinates   3462280..3463554 (+) Length   424 a.a.
NCBI ID   WP_000130305.1    Uniprot ID   P0A6H2
Organism   Escherichia coli strain P276M     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 3457280..3468554
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F6P95_RS16660 (F6P95_16840) yajG 3458443..3459021 (-) 579 WP_001295326.1 lipoprotein -
  F6P95_RS16665 (F6P95_16845) bolA 3459326..3459643 (+) 318 WP_000973448.1 transcriptional regulator BolA -
  F6P95_RS16670 (F6P95_16850) tig 3459987..3461285 (+) 1299 WP_001198386.1 trigger factor -
  F6P95_RS16675 (F6P95_16855) clpP 3461531..3462154 (+) 624 WP_000122253.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  F6P95_RS16680 (F6P95_16860) clpX 3462280..3463554 (+) 1275 WP_000130305.1 ATP-dependent protease ATP-binding subunit ClpX Regulator
  F6P95_RS16685 (F6P95_16865) - 3463742..3464167 (+) 426 Protein_3277 LON peptidase substrate-binding domain-containing protein -
  F6P95_RS16690 - 3464248..3464418 (+) 171 WP_157716941.1 hypothetical protein -
  F6P95_RS16695 (F6P95_16870) - 3465606..3465813 (+) 208 Protein_3279 S16 family serine protease -
  F6P95_RS16700 (F6P95_16875) - 3466392..3466487 (+) 96 Protein_3280 HU family DNA-binding protein -
  F6P95_RS23050 ppiD 3466729..3468071 (+) 1343 Protein_3281 peptidylprolyl isomerase -

Sequence

Protein


Download         Length: 424 a.a.        Molecular weight: 46356.01 Da        Isoelectric Point: 4.9982

>NTDB_id=341734 F6P95_RS16680 WP_000130305.1 3462280..3463554(+) (clpX) [Escherichia coli strain P276M]
MTDKRKDGSGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVAPHRERSALPTPHEIRNHLDDYVIG
QEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVEN
IIQKLLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDT
SKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIGRLPVVATLNELSEE
ALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDE
SVIDGQSKPLLIYGKPEAQQASGE

Nucleotide


Download         Length: 1275 bp        

>NTDB_id=341734 F6P95_RS16680 WP_000130305.1 3462280..3463554(+) (clpX) [Escherichia coli strain P276M]
ATGACAGATAAACGCAAAGATGGCTCAGGCAAATTGCTGTATTGCTCTTTTTGCGGCAAAAGCCAGCATGAAGTGCGCAA
GCTGATTGCCGGTCCATCCGTGTATATCTGCGACGAATGTGTTGATTTATGTAACGACATCATTCGCGAAGAGATTAAAG
AAGTTGCACCGCATCGTGAACGCAGTGCGCTACCGACGCCGCATGAAATTCGCAACCACCTGGACGATTACGTTATCGGC
CAGGAACAGGCGAAAAAAGTGCTGGCGGTCGCGGTATACAACCATTACAAACGTCTGCGCAACGGCGATACCAGCAATGG
CGTCGAGTTGGGCAAAAGTAACATTCTGCTGATCGGTCCGACCGGTTCCGGTAAAACGCTGCTGGCTGAAACGCTGGCGC
GCCTGCTGGATGTTCCGTTCACCATGGCCGACGCGACTACACTGACCGAAGCCGGTTATGTGGGTGAAGACGTTGAAAAC
ATCATTCAGAAGCTGTTGCAGAAATGCGACTACGATGTCCAGAAAGCACAGCGTGGTATTGTCTACATCGATGAAATCGA
CAAGATTTCTCGTAAGTCAGACAACCCGTCCATTACCCGAGACGTTTCCGGTGAAGGCGTACAGCAGGCACTGTTGAAAC
TGATCGAAGGTACGGTAGCAGCTGTTCCACCGCAAGGTGGGCGTAAACATCCGCAGCAGGAATTCTTGCAGGTTGATACC
TCTAAGATCCTGTTTATTTGTGGCGGTGCGTTTGCCGGTCTGGATAAAGTGATTTCCCACCGTGTAGAAACCGGCTCCGG
CATTGGTTTTGGCGCGACGGTAAAAGCGAAGTCCGACAAAGCAAGCGAAGGCGAGCTGCTGGCGCAGGTTGAACCGGAAG
ATCTGATCAAGTTTGGTCTGATCCCTGAGTTCATTGGTCGTCTGCCGGTTGTCGCAACGTTGAATGAACTGAGCGAAGAA
GCTCTGATTCAGATCCTCAAAGAGCCGAAAAACGCCCTGACCAAGCAGTATCAGGCGCTGTTTAATCTGGAAGGCGTGGA
TCTGGAATTCCGTGACGAGGCGCTGGATGCTATCGCTAAGAAAGCGATGGCGCGTAAAACCGGTGCCCGTGGCCTGCGTT
CCATCGTAGAAGCCGCACTGCTCGATACCATGTACGATCTGCCGTCCATGGAAGACGTCGAAAAAGTGGTTATCGACGAG
TCGGTAATTGATGGTCAAAGCAAACCGTTGCTGATTTATGGCAAGCCGGAAGCGCAACAGGCATCCGGTGAATAA

Domains

Predicted by InterProScan.

ClpX C4-type zinc finger (zf-C4_ClpX)

(13-50)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(317-395)

AAA domain (Cdc48 subfamily) (AAA_2)

(112-310)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A6H2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

59.85

94.575

0.566
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

55.392

96.226

0.533

Multiple sequence alignment