Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   ETT61_RS01870 Genome accession   NZ_CP035438
Coordinates   335576..336502 (+) Length   308 a.a.
NCBI ID   WP_136020512.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain emm22.8     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 330576..341502
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETT61_RS01860 (ETT61_01860) amiA 332039..334009 (+) 1971 WP_136020510.1 peptide ABC transporter substrate-binding protein Regulator
  ETT61_RS01865 (ETT61_01865) amiC 334074..335576 (+) 1503 WP_136020511.1 ABC transporter permease Regulator
  ETT61_RS01870 (ETT61_01870) amiD 335576..336502 (+) 927 WP_136020512.1 oligopeptide ABC transporter permease OppC Regulator
  ETT61_RS01875 (ETT61_01875) amiE 336511..337581 (+) 1071 WP_136020513.1 ABC transporter ATP-binding protein Regulator
  ETT61_RS01880 (ETT61_01880) amiF 337574..338497 (+) 924 WP_002986000.1 ABC transporter ATP-binding protein Regulator
  ETT61_RS10490 (ETT61_01885) - 338535..338624 (-) 90 WP_110002794.1 IS3 family transposase -
  ETT61_RS10080 - 338645..338890 (-) 246 WP_175393721.1 transposase -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34936.93 Da        Isoelectric Point: 8.5670

>NTDB_id=341576 ETT61_RS01870 WP_136020512.1 335576..336502(+) (amiD) [Streptococcus pyogenes strain emm22.8]
MESIDKFKFRFIERDSEASEVIDTPAYSYWKSVFRQFFSKKSTVFMLVILVTVLMMSFIYPMFANYDFNDVSNINDFSKR
YIWPNAEYWFGTDKNGQSLFDGVWYGARNSILISVIATLINITIGVVLGAIWGVSKAFDKVMIEIYNIISNIPSMLIIIV
LTYSLGAGFWNLILAFCITGWIGVAYSIRVQILRYRDLEYNLASQTLGTPMYKIAVKNLLPQLVSVIMTMLSQMLPVYVS
SEAFLSFFGIGLPTTTPSLGRLIANYSSNLTTNAYLFWIPLVTLILVSLPLYIVGQNLADASDPRSHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=341576 ETT61_RS01870 WP_136020512.1 335576..336502(+) (amiD) [Streptococcus pyogenes strain emm22.8]
ATGGAATCGATTGATAAATTTAAATTTCGATTTATTGAGCGCGATAGTGAAGCCTCCGAAGTGATTGATACCCCTGCTTA
TTCTTACTGGAAATCAGTGTTTCGTCAGTTTTTTTCTAAAAAATCTACAGTCTTTATGCTCGTGATTTTAGTGACAGTCT
TGATGATGAGCTTTATTTATCCAATGTTTGCCAACTACGACTTTAATGACGTTAGTAATATCAATGACTTTTCAAAGCGT
TATATTTGGCCAAATGCAGAGTACTGGTTTGGAACCGACAAAAATGGGCAATCTCTGTTTGATGGTGTTTGGTATGGGGC
ACGTAATTCTATTTTAATCTCAGTTATAGCGACACTAATTAATATCACCATTGGGGTAGTGTTAGGAGCCATATGGGGAG
TTTCTAAAGCATTTGATAAAGTTATGATTGAAATTTATAACATTATCTCAAATATCCCTTCTATGCTTATTATCATTGTT
TTGACCTATTCATTAGGTGCAGGATTTTGGAATTTGATTCTAGCTTTCTGTATCACTGGATGGATTGGTGTCGCCTACTC
CATCCGTGTTCAAATCTTGCGTTACCGTGATTTAGAATACAACCTTGCTAGTCAAACTTTGGGAACACCAATGTACAAGA
TTGCTGTTAAGAACCTCCTGCCTCAATTGGTTTCAGTTATCATGACTATGTTGTCACAAATGCTACCAGTTTATGTATCT
TCTGAGGCCTTCTTATCCTTCTTTGGGATTGGTTTACCAACCACCACTCCAAGTTTAGGACGTTTGATTGCTAATTATTC
AAGCAACTTAACAACAAATGCCTACCTCTTTTGGATTCCCTTAGTAACATTGATTTTAGTATCGTTACCACTATACATTG
TCGGACAAAACTTGGCTGATGCCAGTGACCCACGTTCACATAGATAG

Domains

Predicted by InterproScan.

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-72)

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-305)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

73.052

100

0.731
  amiD Streptococcus thermophilus LMG 18311

72.403

100

0.724
  amiD Streptococcus thermophilus LMD-9

72.403

100

0.724

Multiple sequence alignment